RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 SCRN1Q12765 414 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 SEC23AQ15436 765 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 GAB4Q2WGN9 574 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 MRM1Q6IN84 353 aaKnown RBP4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 TATDN1Q6P1N9 297 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 EEPD1Q7L9B9 569 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 DGKHQ86XP1 1220 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 ZNF655Q8N720 491 aaPredicted RBP4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 ENAHQ8N8S7 591 aaPredicted RBP4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 DAGLBQ8NCG7 672 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 HOOK2Q96ED9 719 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 ZNF274Q96GC6 653 aaPredicted RBP4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 WRNIP1Q96S55 665 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 KRTAP9-2Q9BYQ4 174 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 VAT1LQ9HCJ6 419 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 ATP13A1Q9HD20 1204 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 ST7Q9NRC1 585 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 CHST7Q9NS84 486 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 TCP11L1Q9NUJ3 509 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 GFOD1Q9NXC2 390 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 MTMR4Q9NYA4 1195 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 SUSD2Q9UGT4 822 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 HERC5Q9UII4 1024 aaKnown RBP4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 SMC3Q9UQE7 1217 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 MSRB2Q9Y3D2 182 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 PPP2R3BQ9Y5P8 575 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 FHOD1Q9Y613 1164 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 NAV1Q8NEY1 1877 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 FRMPD2Q68DX3 1309 aaPredicted RBP4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 WDR19Q8NEZ3 1342 aa4.72□□□□□ -1.65
TMEM39A-204ENST00000468545 ATRNL1Q5VV63 1379 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ROBO3Q96MS0 1386 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 hCG_1642624A0A1W2PR95 340 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 DHX16O60231 1041 aaKnown RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 SUSD5O60279 629 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 JAK2O60674 1132 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 CTNND1O60716 968 aaKnown RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 PPM1BO75688 479 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 CELF2O95319 508 aaKnown RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 TTLL1O95922 423 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 GJB2P29033 226 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 GUCY1A2P33402 732 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ECE1P42892 770 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ZNF445P59923 1031 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 AKAP17AQ02040 695 aaKnown RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ICA1Q05084 483 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 SSRP1Q08945 709 aaKnown RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 IKQ13123 557 aaPredicted RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 IKZF1Q13422 519 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 CCDC96Q2M329 555 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 NOL9Q5SY16 702 aaKnown RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 SLFN13Q68D06 897 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 RCSD1Q6JBY9 416 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 CPLX2Q6PUV4 134 aaKnown RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 APOA5Q6Q788 366 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 TMEM179Q6ZVK1 233 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ARMC9Q7Z3E5 817 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 LDHDQ86WU2 507 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 WFDC3Q8IUB2 231 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 FAM184AQ8NB25 1140 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 FANCBQ8NB91 859 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 FLCNQ8NFG4 579 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 CTCFLQ8NI51 663 aaPredicted RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ACER1Q8TDN7 264 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 PHKBQ93100 1093 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 SLC26A6Q9BXS9 759 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 AGXT2Q9BYV1 514 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 UBA5Q9GZZ9 404 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 OSBPL2Q9H1P3 480 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 EPN3Q9H201 632 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 CPVLQ9H3G5 476 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 KANSL2Q9H9L4 492 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 DUSP13Q9UII6 198 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ZBTB21Q9ULJ3 1066 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 ZHX2Q9Y6X8 837 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 CDK5RAP2Q96SN8 1893 aa4.71□□□□□ -1.66
TMEM39A-204ENST00000468545 LAMA4Q16363 1823 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ECM29Q5VYK3 1845 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 IGKV6D-41A0A0C4DH26 115 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 A0A1W2PRG0 241 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 TRIM75PA6NK02 468 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 F5H6K3 240 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 PLEKHA8P1O95397 391 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 WNT11O96014 354 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ASNSP08243 561 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 PARP1P09874 1014 aaKnown RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 CALM1P0DP23 149 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 CALM2P0DP24 149 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 CALM3P0DP25 149 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 CD8BP10966 210 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 YY1P25490 414 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 KIF5BP33176 963 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SLC16A2P36021 539 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 CD96P40200 585 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SNAP25P60880 206 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 GUCY1B3Q02153 619 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 KLRC3Q07444 240 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ST3GAL1Q11201 340 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms