RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NAA35Q5VZE5 725 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 TTC19Q6DKK2 380 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ZNF746Q6NUN9 644 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 DEFB132Q7Z7B7 95 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 CBWD2Q8IUF1 395 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 MREGQ8N565 214 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 WHAMMQ8TF30 809 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 JDP2Q8WYK2 163 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ATG4CQ96DT6 458 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 TMEM117Q9H0C3 514 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 NEUROG2Q9H2A3 272 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ACP6Q9NPH0 428 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 CHORDC1Q9UHD1 332 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 TCEAL9Q9UHQ7 104 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 LCMT1Q9UIC8 334 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 WDR64B1ANS9 1081 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 CCDC188H7C350 402 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 VWA5AO00534 786 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 SHOX2O60902 331 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ZBED4O75132 1171 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 FTLP02792 175 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 RFX1P22670 979 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 NCKAP1LP55160 1127 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 PRPF4BQ13523 1007 aaKnown RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 BAATQ14032 418 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ANO5Q75V66 913 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ADAT2Q7Z6V5 191 aaKnown RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 RPUSD2Q8IZ73 545 aaKnown RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 TMEM174Q8WUU8 243 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 CCDC127Q96BQ5 260 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 SAAL1Q96ER3 474 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 POP1Q99575 1024 aaKnown RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 CELF4Q9BZC1 486 aaKnown RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ST6GALNAC4Q9H4F1 302 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 MAP3K20Q9NYL2 800 aaKnown RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 PIM2Q9P1W9 311 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 RGS17Q9UGC6 210 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 FZD1Q9UP38 647 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 TELO2Q9Y4R8 837 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 TTI1O43156 1089 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 MXI1P50539 228 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 IRAK1P51617 712 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 MAP2K1Q02750 393 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 ZNF211Q13398 564 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 TNFAIP1Q13829 316 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 NBPF12Q5TAG4 269 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 FMNL3Q8IVF7 1028 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 SEMA4DQ92854 862 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 ELMO3Q96BJ8 720 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 CAPS2Q9BXY5 557 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 RSPH14Q9UHP6 348 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 DAAM1Q9Y4D1 1078 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 WDR81Q562E7 1941 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 BHMG1C9JSJ3 638 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 P4HA2O15460 535 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 DAPK3O43293 454 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 SGPL1O95470 568 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 CNGA1P29973 690 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 COPB2P35606 906 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 FLT3P36888 993 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 HSPA9P38646 679 aaKnown RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 NPTX2P47972 431 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 JAK3P52333 1124 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 ZNF280AP59817 542 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 KRT76Q01546 638 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 CUL1Q13616 776 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 SNRNP35Q16560 246 aaKnown RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 POTEAQ6S8J7 498 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 PPM1KQ8N3J5 372 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 TMEM161BQ8NDZ6 487 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 BSNDQ8WZ55 320 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 ALG3Q92685 438 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 ZKSCAN4Q969J2 545 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 RNPC3Q96LT9 517 aaKnown RBP9.67□□□□□ -0.86
SYNE1-217ENST00000466159 KREMEN1Q96MU8 473 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 PCDHB18PQ96TA0 734 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 TAOK3Q9H2K8 898 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 RABEP2Q9H5N1 569 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 RNF146Q9NTX7 359 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 TBX20Q9UMR3 447 aa9.67□□□□□ -0.86
SYNE1-217ENST00000466159 KIAA1217Q5T5P2 1943 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 DENND3A2RUS2 1198 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 CYP26A1O43174 497 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 NR3C2P08235 984 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 CHRNB2P17787 502 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 SFNP31947 248 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 PRAMEF18Q5VWM3 479 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 AADACL2Q6P093 401 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 NOP9Q86U38 636 aaKnown RBP9.66□□□□□ -0.86
SYNE1-217ENST00000466159 MOV10L1Q9BXT6 1211 aaKnown RBP9.66□□□□□ -0.86
SYNE1-217ENST00000466159 TOPORSQ9NS56 1045 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-217ENST00000466159 ANKEF1Q9NU02 776 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 TMOD4Q9NZQ9 345 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 CTTNBP2NLQ9P2B4 639 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 HACL1Q9UJ83 578 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 PLAAQ9Y263 795 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 ALG6Q9Y672 507 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 DOCK5Q9H7D0 1870 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 TMEM110-MUSTN1A8MSY1 372 aa9.66□□□□□ -0.86
SYNE1-217ENST00000466159 TULP2O00295 520 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms