RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CLEC1BQ9P126 229 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 KIF3AQ9Y496 699 aa15.51■□□□□ 0.07
USP4-206ENST00000461553 MEIS3P2A8K0S8 358 aa15.5■□□□□ 0.07
USP4-206ENST00000461553 TSPAN1O60635 241 aa15.5■□□□□ 0.07
USP4-206ENST00000461553 AXLP30530 894 aa15.5■□□□□ 0.07
USP4-206ENST00000461553 TECP42680 631 aa15.5■□□□□ 0.07
USP4-206ENST00000461553 NCBP1Q09161 790 aaKnown RBP15.5■□□□□ 0.07
USP4-206ENST00000461553 ZNF174Q15697 407 aa15.5■□□□□ 0.07
USP4-206ENST00000461553 CNNM3Q8NE01 707 aa15.5■□□□□ 0.07
USP4-206ENST00000461553 ASAP3Q8TDY4 903 aa15.5■□□□□ 0.07
USP4-206ENST00000461553 GBP3Q9H0R5 595 aa15.5■□□□□ 0.07
USP4-206ENST00000461553 HIDE1A8MVS5 230 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 NT5C1B-RDH14C9J2C7 533 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 PI4K2BG5E9Z4 385 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 OFD1O75665 1012 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 XRCC6P12956 609 aaKnown RBP eCLIP15.49■□□□□ 0.07
USP4-206ENST00000461553 ALADP13716 330 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 GLRA2P23416 452 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 HOXA11P31270 313 aaPredicted RBP15.49■□□□□ 0.07
USP4-206ENST00000461553 MBTD1Q05BQ5 628 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 POU5F1BQ06416 359 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 POTEGQ6S5H5 508 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 CATSPER3Q86XQ3 398 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 IFNLR1Q8IU57 520 aaPredicted RBP15.49■□□□□ 0.07
USP4-206ENST00000461553 MCPH1Q8NEM0 835 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 VN1R2Q8NFZ6 395 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 FAM193BQ96PV7 902 aaPredicted RBP15.49■□□□□ 0.07
USP4-206ENST00000461553 POLR3CQ9BUI4 534 aaPredicted RBP15.49■□□□□ 0.07
USP4-206ENST00000461553 NFKBIZQ9BYH8 718 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 TRIM6Q9C030 488 aaPredicted RBP15.49■□□□□ 0.07
USP4-206ENST00000461553 NRDE2Q9H7Z3 1164 aa15.49■□□□□ 0.07
USP4-206ENST00000461553 USP15Q9Y4E8 981 aaPredicted RBP15.49■□□□□ 0.07
USP4-206ENST00000461553 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.48■□□□□ 0.07
USP4-206ENST00000461553 FAM86C2PA6NEL3 165 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 LRRIQ4A6NIV6 560 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 C19orf67A6NJJ6 358 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 DCXO43602 365 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 MED24O75448 989 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 SPATA31C1P0DKV0 1188 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 ITGA4P13612 1032 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 NCLP19338 710 aaKnown RBP15.48■□□□□ 0.07
USP4-206ENST00000461553 ARL2P36404 184 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 RBM10P98175 930 aaKnown RBP15.48■□□□□ 0.07
USP4-206ENST00000461553 UBXN11Q5T124 520 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 LLGL2Q6P1M3 1020 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 AGMOQ6ZNB7 445 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 MRPL10Q7Z7H8 261 aaKnown RBP15.48■□□□□ 0.07
USP4-206ENST00000461553 HACE1Q8IYU2 909 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 TMEM87AQ8NBN3 555 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 IGSF21Q96ID5 467 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 CPB2Q96IY4 423 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 NACC1Q96RE7 527 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 ZBP1Q9H171 429 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 UBN1Q9NPG3 1134 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 KANSL3Q9P2N6 904 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 DBR1Q9UK59 544 aaKnown RBP15.48■□□□□ 0.07
USP4-206ENST00000461553 IPPQ9Y573 584 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 DENND4AQ7Z401 1863 aa15.48■□□□□ 0.07
USP4-206ENST00000461553 TRIP11Q15643 1979 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 ARHGEF35A5YM69 484 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 C2orf71A6NGG8 1288 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 TRIOO75962 3097 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 RPA1P27694 616 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 SLC11A1P49279 550 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 ANKRD54Q6NXT1 300 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 MAEAQ7L5Y9 396 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 DDX53Q86TM3 631 aaKnown RBP15.47■□□□□ 0.07
USP4-206ENST00000461553 TMEM173Q86WV6 379 aaPredicted RBP15.47■□□□□ 0.07
USP4-206ENST00000461553 ZBTB8OSQ8IWT0 167 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 VPS52Q8N1B4 723 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 CASP10Q92851 521 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 LRFN3Q9BTN0 628 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 EIF2AQ9BY44 585 aaKnown RBP15.47■□□□□ 0.07
USP4-206ENST00000461553 RAB34Q9BZG1 259 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 CSRNP2Q9H175 543 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 GPRC5CQ9NQ84 441 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 DNAJB4Q9UDY4 337 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 STK39Q9UEW8 545 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 HCN4Q9Y3Q4 1203 aa15.47■□□□□ 0.07
USP4-206ENST00000461553 PLXNA3P51805 1871 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 C2orf16Q68DN1 1984 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 A0A087WWV3 80 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 GPR37L1O60883 481 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 POMCP01189 267 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 GALTP07902 379 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 ARF4P18085 180 aaPredicted RBP15.46■□□□□ 0.07
USP4-206ENST00000461553 MUTP22033 750 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 U2AF2P26368 475 aaKnown RBP eCLIP15.46■□□□□ 0.07
USP4-206ENST00000461553 FXR2P51116 673 aaKnown RBP eCLIP15.46■□□□□ 0.07
USP4-206ENST00000461553 GIT2Q14161 759 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 NBR1Q14596 966 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 TMEM184AQ6ZMB5 413 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 MRPL43Q8N983 215 aaKnown RBP15.46■□□□□ 0.07
USP4-206ENST00000461553 SMG8Q8ND04 991 aaKnown RBP15.46■□□□□ 0.07
USP4-206ENST00000461553 TMEM175Q9BSA9 504 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 APOL6Q9BWW8 343 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 C11orf16Q9NQ32 467 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 HCFC2Q9Y5Z7 792 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 CITO14578 2027 aa15.46■□□□□ 0.07
USP4-206ENST00000461553 B4GALT5O43286 388 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms