RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RNPEPL1Q9HAU8 725 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 DNAJC12Q9UKB3 198 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 LRRD1A4D1F6 860 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 ANKRD33BA6NCL7 494 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 UBAP1LF5GYI3 381 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 TPBGLP0DKB5 382 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 HIBADHP31937 336 aaKnown RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 PTDSS1P48651 473 aaKnown RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 RPS6KA3P51812 740 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 UBE4AQ14139 1066 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 RRP1BQ14684 758 aaKnown RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 HP1BP3Q5SSJ5 553 aaPredicted RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 TTBK2Q6IQ55 1244 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 SLC30A5Q8TAD4 765 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 ELMO3Q96BJ8 720 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 CARD9Q9H257 536 aa12.59□□□□□ -0.39
CPSF3-202ENST00000460593 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.59□□□□□ -0.39
CPSF3-202ENST00000460593 USP17L15C9J2P7 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L13C9JLJ4 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L11C9JVI0 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L18D6R9N7 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L22D6RA61 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L17D6RBQ6 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L19D6RCP7 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L20D6RJB6 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 NR3C1P04150 777 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 FESP07332 822 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 SLURP2P0DP57 97 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L24Q0WX57 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 TNFAIP8L3Q5GJ75 292 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 CWF19L1Q69YN2 538 aaKnown RBP12.58□□□□□ -0.4
CPSF3-202ENST00000460593 RFWD3Q6PCD5 774 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L6PQ6QN14 398 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 NSMFQ6X4W1 530 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 PIGOQ8TEQ8 1089 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 REEP2Q9BRK0 252 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 G3BP2Q9UN86 482 aaKnown RBP12.58□□□□□ -0.4
CPSF3-202ENST00000460593 SUGT1Q9Y2Z0 365 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 PAPPAQ13219 1627 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 SMAPO00193 183 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 PPP1R11O60927 126 aaPredicted RBP12.58□□□□□ -0.4
CPSF3-202ENST00000460593 LUC7L3O95232 432 aaKnown RBP12.58□□□□□ -0.4
CPSF3-202ENST00000460593 GCNT3O95395 438 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 PYGLP06737 847 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 RARGP13631 454 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 CALB2P22676 271 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 DHX34Q14147 1143 aaKnown RBP12.58□□□□□ -0.4
CPSF3-202ENST00000460593 PDIA5Q14554 519 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 SLMAPQ14BN4 828 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 CAPN12Q6ZSI9 719 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 INTS8Q75QN2 995 aaKnown RBP12.58□□□□□ -0.4
CPSF3-202ENST00000460593 FBXO33Q7Z6M2 555 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 KIAA0825Q8IV33 1275 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 RUSC1Q9BVN2 902 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 PITPNM3Q9BZ71 974 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 KCNQ5Q9NR82 932 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 CHKBQ9Y259 395 aa12.58□□□□□ -0.4
CPSF3-202ENST00000460593 GOLGB1Q14789 3259 aaKnown RBP12.58□□□□□ -0.4
CPSF3-202ENST00000460593 A0A0A6YYK5 440 aaPredicted RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TAL1P17542 331 aaPredicted RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TNFAIP3P21580 790 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 COMTP21964 271 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 SOX5P35711 763 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CDK8P49336 464 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 KNOP1Q1ED39 458 aaKnown RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 NBPF20Q3BBV1 942 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CBWD6Q4V339 395 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 ZC2HC1CQ53FD0 456 aaPredicted RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CBWD3Q5JTY5 395 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CBWD5Q5RIA9 395 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 MIGA2Q7L4E1 593 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TRIM7Q9C029 511 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 SLAIN2Q9P270 581 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CNOT7Q9UIV1 285 aaKnown RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TTC7AQ9ULT0 858 aaPredicted RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 NHSL1Q5SYE7 1610 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 AHCYL1O43865 530 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CAMTA2O94983 1202 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TMEM253P0C7T8 217 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TAC1P20366 129 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 GBP1P32455 592 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CRKLP46109 303 aaKnown RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 PEX5P50542 639 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 INTS5Q6P9B9 1019 aaKnown RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 RFX8Q6ZV50 586 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 PHLDB2Q86SQ0 1253 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 C9orf72Q96LT7 481 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TBC1D10AQ9BXI6 508 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 DENND2DQ9H6A0 471 aaPredicted RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 ASTN1O14525 1302 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TP73O15350 636 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 TOM1O60784 492 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CCNB1P14635 433 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 RBM5P52756 815 aaKnown RBP eCLIP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 SEPT2Q15019 361 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 FOXB2Q5VYV0 432 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 STK32AQ8WU08 396 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 LRRC27Q9C0I9 530 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 DHX36Q9H2U1 1008 aaKnown RBP12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CYP39A1Q9NYL5 469 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms