RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 NFE2L3Q9Y4A8 694 aa11.33□□□□□ -0.6
USP39-210ENST00000459775 DENND3A2RUS2 1198 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 CLIC2O15247 247 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 GAP43P17677 238 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 RFC5P40937 340 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 ACLYP53396 1101 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 LAMTOR4Q0VGL1 99 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 PSMD2Q13200 908 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 LRIT3Q3SXY7 679 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 ZNF484Q5JVG2 852 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 ARID2Q68CP9 1835 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 GDF6Q6KF10 455 aaPredicted RBP11.32□□□□□ -0.6
USP39-210ENST00000459775 TTI2Q6NXR4 508 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 NFRKBQ6P4R8 1299 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 KIAA0319LQ8IZA0 1049 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 C7orf31Q8N865 590 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 ZSWIM2Q8NEG5 633 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 P2RX5Q93086 422 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 WNT8BQ93098 351 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 NLRP4Q96MN2 994 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 NAT10Q9H0A0 1025 aaKnown RBP11.32□□□□□ -0.6
USP39-210ENST00000459775 KCTD10Q9H3F6 313 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 CDHR5Q9HBB8 845 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 KMT5AQ9NQR1 393 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 ZMYM2Q9UBW7 1377 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 TGFB1I1O43294 461 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 PPP1R37O75864 691 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 MYL5Q02045 173 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 DMP1Q13316 513 aaPredicted RBP11.32□□□□□ -0.6
USP39-210ENST00000459775 NECAB2Q7Z6G3 386 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 GUF1Q8N442 669 aaKnown RBP11.32□□□□□ -0.6
USP39-210ENST00000459775 RNF149Q8NC42 400 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 KIFAP3Q92845 792 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 STRA6Q9BX79 667 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 MINDY3Q9H8M7 445 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 AKT3Q9Y243 479 aa11.32□□□□□ -0.6
USP39-210ENST00000459775 PSMA7O14818 248 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 IQCF3P0C7M6 154 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 CCNE1P24864 410 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 ERCC5P28715 1186 aaPredicted RBP11.31□□□□□ -0.6
USP39-210ENST00000459775 ADAM17P78536 824 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 POU5F1Q01860 360 aaKnown RBP11.31□□□□□ -0.6
USP39-210ENST00000459775 CENPPQ6IPU0 288 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 RNF180Q86T96 592 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 IRF2BP1Q8IU81 584 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 LINC01465Q8N7H1 131 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 ENOX1Q8TC92 643 aaKnown RBP11.31□□□□□ -0.6
USP39-210ENST00000459775 DNAJB3Q8WWF6 145 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 MRRFQ96E11 262 aaKnown RBP11.31□□□□□ -0.6
USP39-210ENST00000459775 CTAGE1Q96RT6 745 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 GDF15Q99988 308 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 SRRTQ9BXP5 876 aaKnown RBP11.31□□□□□ -0.6
USP39-210ENST00000459775 CRISPLD2Q9H0B8 497 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 PAK6Q9NQU5 681 aaPredicted RBP11.31□□□□□ -0.6
USP39-210ENST00000459775 RWDD2AQ9UIY3 292 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 FAN1Q9Y2M0 1017 aa11.31□□□□□ -0.6
USP39-210ENST00000459775 ANKRD63C9JTQ0 380 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 SOX1O00570 391 aaPredicted RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 TFRCP02786 760 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 MAPTP10636 758 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 FGFR4P22455 802 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 NCKAP1LP55160 1127 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 NKX3-2P78367 333 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 KNOP1Q1ED39 458 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 KIZQ2M2Z5 673 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 MTERF4Q7Z6M4 381 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 CDR2LQ86X02 465 aaPredicted RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 ZNF507Q8TCN5 953 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 PSPC1Q8WXF1 523 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 DHTKD1Q96HY7 919 aaPredicted RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 IFT74Q96LB3 600 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 BPIFA3Q9BQP9 254 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 TRMT13Q9NUP7 481 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 PUF60Q9UHX1 559 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 DACH1Q9UI36 760 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 NRCAMQ92823 1304 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 A0A087WZ62 844 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 C17orf102A2RUQ5 167 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 GOLGA6L19H0YKK7 550 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 CBFA2T2O43439 604 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 CYP2C9P11712 490 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 NLRP11P59045 1033 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 PSMC1P62191 440 aaKnown RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 STIM1Q13586 685 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 ZCWPW2Q504Y3 356 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 SPATA1Q5VX52 437 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 IER5Q5VY09 327 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 CSGALNACT2Q8N6G5 542 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 FDXACB1Q9BRP7 624 aaPredicted RBP11.3□□□□□ -0.6
USP39-210ENST00000459775 TIPINQ9BVW5 301 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 OSBPL7Q9BZF2 842 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 PCIF1Q9H4Z3 704 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 SEL1LQ9UBV2 794 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 TBX20Q9UMR3 447 aa11.3□□□□□ -0.6
USP39-210ENST00000459775 A0A1W2PQ45 241 aaPredicted RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 A0A1W2PQY0 241 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 MBLAC1A4D2B0 266 aaPredicted RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 ZEB2O60315 1214 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 CCDC172P0C7W6 258 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 CST5P28325 142 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms