RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 PCDHB2Q9Y5E7 798 aa6.73□□□□□ -1.33
HLA-DPA3-207ENST00000454398 SNX14Q9Y5W7 946 aa6.73□□□□□ -1.33
HLA-DPA3-207ENST00000454398 KRBA1A5PL33 1030 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 ZBTB39O15060 712 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 TEX28O15482 410 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 B4GALT5O43286 388 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 PRPF3O43395 683 aaKnown RBP6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 URODP06132 367 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 DCNP07585 359 aaKnown RBP6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 SRGAP2CP0DJJ0 459 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 RFX1P22670 979 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 RPS6KB1P23443 525 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 KLRC2P26717 231 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 GNA11P29992 359 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 GBP2P32456 591 aaPredicted RBP6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 NBL1P41271 181 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 SCNN1GP51170 649 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 NLRP5P59047 1200 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 AKAP17AQ02040 695 aaKnown RBP6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 EMC2Q15006 297 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 ANGPT1Q15389 498 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 ATAT1Q5SQI0 421 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 BLOC1S2Q6QNY1 142 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 POTEHQ6S545 545 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 GPR149Q86SP6 731 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 DDX53Q86TM3 631 aaKnown RBP6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 POTEDQ86YR6 584 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 CCDC105Q8IYK2 499 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 ZDHHC14Q8IZN3 488 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 CCDC148Q8NFR7 591 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 URGCPQ8TCY9 931 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 OXER1Q8TDS5 423 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 CCDC12Q8WUD4 166 aaPredicted RBP6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 NKD2Q969F2 451 aaPredicted RBP6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 KLHL5Q96PQ7 755 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 RIT2Q99578 217 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 LXNQ9BS40 222 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 FOXQ1Q9C009 403 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 GLT8D2Q9H1C3 349 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 RNF39Q9H2S5 420 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 TBC1D17Q9HA65 648 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 RSAD1Q9HA92 442 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 KCNK12Q9HB15 430 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 IFT122Q9HBG6 1241 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 CYP26B1Q9NR63 512 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 DDX25Q9UHL0 483 aaKnown RBP6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 VAV3Q9UKW4 847 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 DUSP12Q9UNI6 340 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 COL4A3BPQ9Y5P4 624 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 ZFHX4Q86UP3 3567 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 CLUHO75153 1309 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 VWA8A3KMH1 1905 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 MIA3Q5JRA6 1907 aa6.72□□□□□ -1.33
HLA-DPA3-207ENST00000454398 A0A087WWV3 80 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 IGKV6-21A0A0C4DH24 114 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 MED19A0JLT2 244 aaPredicted RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 POTEMA6NI47 508 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 PROB1E7EW31 1015 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 STK25O00506 426 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 NRP1O14786 923 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 INPPL1O15357 1258 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 TSPAN1O60635 241 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 LILRB3O75022 631 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 EFEMP2O95967 443 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 AOC1P19801 751 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 IGFBP6P24592 240 aaPredicted RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 PDIA3P30101 505 aaKnown RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 HOXA11P31270 313 aaPredicted RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 SFNP31947 248 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 OR1G1P47890 313 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 RCAN1P53805 252 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 POLGP54098 1239 aaPredicted RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 NTHL1P78549 312 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 LAMTOR4Q0VGL1 99 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 TOB2Q14106 344 aaPredicted RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 KRT32Q14532 448 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 LETM2Q2VYF4 491 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 XKR3Q5GH77 459 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 EARS2Q5JPH6 523 aaKnown RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 MCTP2Q6DN12 878 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 NCAPH2Q6IBW4 605 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 ZNF410Q86VK4 478 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 PALB2Q86YC2 1186 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 DTWD2Q8NBA8 298 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 RNF149Q8NC42 400 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 SMG8Q8ND04 991 aaKnown RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 BICD2Q8TD16 824 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 KCNG4Q8TDN1 519 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 ASAP3Q8TDY4 903 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 PRPF31Q8WWY3 499 aaKnown RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 SMG7Q92540 1137 aaKnown RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 ZNF707Q96C28 371 aaPredicted RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 GAD1Q99259 594 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 HINFPQ9BQA5 517 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 PAAF1Q9BRP4 392 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 RNF26Q9BY78 433 aaPredicted RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 CXCL16Q9H2A7 254 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 NRBP2Q9NSY0 501 aa6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 RNF216Q9NWF9 866 aaPredicted RBP6.71□□□□□ -1.34
HLA-DPA3-207ENST00000454398 RGL1Q9NZL6 768 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms