RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 GBP3Q9H0R5 595 aa18.28■□□□□ 0.52
NCKIPSD-208ENST00000454134 NRDE2Q9H7Z3 1164 aa18.28■□□□□ 0.52
NCKIPSD-208ENST00000454134 PCDHB6Q9Y5E3 794 aa18.28■□□□□ 0.52
NCKIPSD-208ENST00000454134 B4GALT3O60512 393 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 RPA1P27694 616 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 TRAPPC10P48553 1259 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 ZP2Q05996 745 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 MBTD1Q05BQ5 628 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 TMC7Q7Z402 723 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 MRPL10Q7Z7H8 261 aaKnown RBP18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 IFNLR1Q8IU57 520 aaPredicted RBP18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 ERMNQ8TAM6 284 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 NACC1Q96RE7 527 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 EIF2AQ9BY44 585 aaKnown RBP18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 DNAJB4Q9UDY4 337 aa18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 DBR1Q9UK59 544 aaKnown RBP18.27■□□□□ 0.52
NCKIPSD-208ENST00000454134 B4GALT5O43286 388 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 POU5F1BQ06416 359 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 PTGDRQ13258 359 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 SMAD2Q15796 467 aaKnown RBP18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 ECM1Q16610 540 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 AMHR2Q16671 573 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 MCTP1Q6DN14 999 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 ZNF280BQ86YH2 543 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 SMG8Q8ND04 991 aaKnown RBP18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 BCL7CQ8WUZ0 217 aaPredicted RBP18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 RSAD1Q9HA92 442 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 NGRNQ9NPE2 291 aaKnown RBP18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 HES2Q9Y543 173 aa18.26■□□□□ 0.51
NCKIPSD-208ENST00000454134 C5orf42Q9H799 3197 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 LRRIQ4A6NIV6 560 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 DDHD2O94830 711 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 POMCP01189 267 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 GALTP07902 379 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 ARF4P18085 180 aaPredicted RBP18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 NCLP19338 710 aaKnown RBP18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 CA8P35219 290 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 CCT6AP40227 531 aaKnown RBP18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 SLC11A1P49279 550 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 FXR2P51116 673 aaKnown RBP eCLIP18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 LLGL2Q6P1M3 1020 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 NOTUMQ6P988 496 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 CDR2LQ86X02 465 aaPredicted RBP18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 ADHFE1Q8IWW8 467 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 SMRP1Q8NCR6 262 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 URGCPQ8TCY9 931 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 TMEM169Q96HH4 297 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 CDCA3Q99618 268 aaPredicted RBP18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 RNF39Q9H2S5 420 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 PRKAG3Q9UGI9 489 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 IPPQ9Y573 584 aa18.25■□□□□ 0.51
NCKIPSD-208ENST00000454134 ARHGEF35A5YM69 484 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 EYA4O95677 639 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 ITGA4P13612 1032 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 GJB2P29033 226 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 AXLP30530 894 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 NCBP1Q09161 790 aaKnown RBP18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 COASYQ13057 564 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 SMC1AQ14683 1233 aaKnown RBP18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 PADI6Q6TGC4 694 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 VPS52Q8N1B4 723 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 MRPL43Q8N983 215 aaKnown RBP18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 MCPH1Q8NEM0 835 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 AUTS2Q8WXX7 1259 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 RSPH1Q8WYR4 309 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 IGSF21Q96ID5 467 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 TBC1D32Q96NH3 1257 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 APOL6Q9BWW8 343 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 C1QTNF1Q9BXJ1 281 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 NFKBIZQ9BYH8 718 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 CSRNP2Q9H175 543 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 POLD4Q9HCU8 107 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 LRWD1Q9UFC0 647 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 RAPGEFL1Q9UHV5 662 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 KIF3AQ9Y496 699 aa18.24■□□□□ 0.51
NCKIPSD-208ENST00000454134 CNTNAP2Q9UHC6 1331 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 FAM86C2PA6NEL3 165 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 C2orf71A6NGG8 1288 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 C19orf67A6NJJ6 358 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 CXCL14O95715 111 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 CYP11B2P19099 503 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 KCNC3Q14003 757 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 PCBP1Q15365 356 aaKnown RBP eCLIP18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 IL17AQ16552 155 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 HAUS3Q68CZ6 603 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 CNNM3Q8NE01 707 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 BSNDQ8WZ55 320 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 CCDC51Q96ER9 411 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 APOL5Q9BWW9 433 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 NXF3Q9H4D5 531 aaKnown RBP18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 KIAA1024Q9UPX6 916 aa18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 USP15Q9Y4E8 981 aaPredicted RBP18.23■□□□□ 0.51
NCKIPSD-208ENST00000454134 PP2D1A8MPX8 630 aa18.22■□□□□ 0.51
NCKIPSD-208ENST00000454134 PI4K2BG5E9Z4 385 aa18.22■□□□□ 0.51
NCKIPSD-208ENST00000454134 COL9A1P20849 921 aa18.22■□□□□ 0.51
NCKIPSD-208ENST00000454134 MLH1P40692 756 aa18.22■□□□□ 0.51
NCKIPSD-208ENST00000454134 SNX29Q8TEQ0 813 aa18.22■□□□□ 0.51
NCKIPSD-208ENST00000454134 ZFP42Q96MM3 310 aa18.22■□□□□ 0.51
NCKIPSD-208ENST00000454134 FAM193BQ96PV7 902 aaPredicted RBP18.22■□□□□ 0.51
NCKIPSD-208ENST00000454134 GAD1Q99259 594 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms