RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 INO80B-WBP1J3KQ70 363 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 GPR182O15218 404 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 EIF3DO15371 548 aaKnown RBP eCLIP12.74□□□□□ -0.37
SCN9A-204ENST00000452182 NBNO60934 754 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 RPS6KA5O75582 802 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 NMT1P30419 496 aaKnown RBP12.74□□□□□ -0.37
SCN9A-204ENST00000452182 STK4Q13043 487 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 COBLL1Q53SF7 1204 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 ZNF658Q5TYW1 1059 aaPredicted RBP12.74□□□□□ -0.37
SCN9A-204ENST00000452182 CAVIN1Q6NZI2 390 aaKnown RBP12.74□□□□□ -0.37
SCN9A-204ENST00000452182 TMEM199Q8N511 208 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 KIAA0895Q8NCT3 520 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 PHF12Q96QT6 1004 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 MAN1B1Q9UKM7 699 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 NOC2LQ9Y3T9 749 aaKnown RBP12.74□□□□□ -0.37
SCN9A-204ENST00000452182 NR2E3Q9Y5X4 410 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 UBE4BO95155 1302 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 SCN5AQ14524 2016 aa12.74□□□□□ -0.37
SCN9A-204ENST00000452182 ACKR2O00590 384 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 GCNT3O95395 438 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 PFKMP08237 780 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 GHRP10912 638 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 PRKCSHP14314 528 aaPredicted RBP12.73□□□□□ -0.37
SCN9A-204ENST00000452182 AXLP30530 894 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 CASP5P51878 434 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 CCL23P55773 120 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 STRN3Q13033 797 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 MORC3Q14149 939 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 AMHR2Q16671 573 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 BMT2Q1RMZ1 405 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 PLEKHG4Q58EX7 1191 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 TAS1R3Q7RTX0 852 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 FAM228AQ86W67 206 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 MAP4K3Q8IVH8 894 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 EFCAB3Q8N7B9 438 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 ZNF507Q8TCN5 953 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 HPS3Q969F9 1004 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 SCLYQ96I15 445 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 FGFBP2Q9BYJ0 223 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 AGO3Q9H9G7 860 aaKnown RBP12.73□□□□□ -0.37
SCN9A-204ENST00000452182 ERVK-5Q9HDB9 667 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 SLC39A2Q9NP94 309 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 TBC1D7Q9P0N9 293 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 PADI3Q9ULW8 664 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 TBX20Q9UMR3 447 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 CSDE1O75534 798 aaKnown RBP12.73□□□□□ -0.37
SCN9A-204ENST00000452182 ERLIN2O94905 339 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 LETM1O95202 739 aaPredicted RBP12.73□□□□□ -0.37
SCN9A-204ENST00000452182 KIF20AO95235 890 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 PRKCBP05771 671 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 MYBP10242 640 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 PAK2Q13177 524 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 ZC2HC1CQ53FD0 456 aaPredicted RBP12.73□□□□□ -0.37
SCN9A-204ENST00000452182 L1TD1Q5T7N2 865 aaKnown RBP12.73□□□□□ -0.37
SCN9A-204ENST00000452182 SCFD1Q8WVM8 642 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 APBB2Q92870 758 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 IFIH1Q9BYX4 1025 aaKnown RBP12.73□□□□□ -0.37
SCN9A-204ENST00000452182 OSBPL7Q9BZF2 842 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 TMEM206Q9H813 350 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 CHST12Q9NRB3 414 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 ST3GAL5Q9UNP4 418 aa12.73□□□□□ -0.37
SCN9A-204ENST00000452182 CNTNAP2Q9UHC6 1331 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 TSPAN1O60635 241 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 PIGRP01833 764 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 PPP1R2P41236 205 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 NCBP1Q09161 790 aaKnown RBP12.72□□□□□ -0.37
SCN9A-204ENST00000452182 PRPF4BQ13523 1007 aaKnown RBP12.72□□□□□ -0.37
SCN9A-204ENST00000452182 ZPBP2Q6X784 338 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 CATSPER4Q7RTX7 472 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 RPUSD2Q8IZ73 545 aaKnown RBP12.72□□□□□ -0.37
SCN9A-204ENST00000452182 GUF1Q8N442 669 aaKnown RBP12.72□□□□□ -0.37
SCN9A-204ENST00000452182 GLIS3Q8NEA6 775 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 VWCEQ96DN2 955 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 ACCSQ96QU6 501 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 FTHL17Q9BXU8 183 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 MRPL4Q9BYD3 311 aaKnown RBP12.72□□□□□ -0.37
SCN9A-204ENST00000452182 AGPAT5Q9NUQ2 364 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 EXOC7Q9UPT5 735 aa12.72□□□□□ -0.37
SCN9A-204ENST00000452182 A0A1B0GUA9 196 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 CSF2RAP15509 400 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 ARF4P18085 180 aaPredicted RBP12.71□□□□□ -0.37
SCN9A-204ENST00000452182 BMP6P22004 513 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 HOXA11P31270 313 aaPredicted RBP12.71□□□□□ -0.37
SCN9A-204ENST00000452182 CD52P31358 61 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 NFX1Q12986 1120 aaKnown RBP12.71□□□□□ -0.37
SCN9A-204ENST00000452182 PPIGQ13427 754 aaKnown RBP eCLIP12.71□□□□□ -0.372e-6■□□□□ 9.7
SCN9A-204ENST00000452182 MYOCDQ8IZQ8 938 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 SEPT8Q92599 483 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 BADQ92934 168 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 CCDC51Q96ER9 411 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 TRAIPQ9BWF2 469 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 GDAQ9Y2T3 454 aa12.71□□□□□ -0.37
SCN9A-204ENST00000452182 TNRC18O15417 2968 aaPredicted RBP12.7□□□□□ -0.38
SCN9A-204ENST00000452182 PRPF6O94906 941 aaKnown RBP12.7□□□□□ -0.38
SCN9A-204ENST00000452182 EDN1P05305 212 aa12.7□□□□□ -0.38
SCN9A-204ENST00000452182 SYN1P17600 705 aa12.7□□□□□ -0.38
SCN9A-204ENST00000452182 FGFR4P22455 802 aa12.7□□□□□ -0.38
SCN9A-204ENST00000452182 HOXD13P35453 343 aa12.7□□□□□ -0.38
SCN9A-204ENST00000452182 SNRPFP62306 86 aaKnown RBP12.7□□□□□ -0.38
SCN9A-204ENST00000452182 FPGSQ05932 587 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms