RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 ZC3H11AO75152 810 aaKnown RBP eCLIP13.87□□□□□ -0.19
CPSF4-208ENST00000452047 ERLIN2O94905 339 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 RPA1P27694 616 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 SSTR3P32745 418 aaPredicted RBP13.87□□□□□ -0.19
CPSF4-208ENST00000452047 TECP42680 631 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 ALDH7A1P49419 539 aaKnown RBP13.87□□□□□ -0.19
CPSF4-208ENST00000452047 AFF1P51825 1210 aaKnown RBP13.87□□□□□ -0.19
CPSF4-208ENST00000452047 TFDP1Q14186 410 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 NBR1Q14596 966 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 AMHR2Q16671 573 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 POTEGQ6S5H5 508 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 TMEM184AQ6ZMB5 413 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 C4orf32Q8N8J7 132 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 PGBD4Q96DM1 585 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 CCDC43Q96MW1 224 aaKnown RBP13.87□□□□□ -0.19
CPSF4-208ENST00000452047 NRDE2Q9H7Z3 1164 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 DBR1Q9UK59 544 aaKnown RBP13.87□□□□□ -0.19
CPSF4-208ENST00000452047 INPP5FQ9Y2H2 1132 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 WDFY4Q6ZS81 3184 aa13.87□□□□□ -0.19
CPSF4-208ENST00000452047 CD2BP2O95400 341 aaKnown RBP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 GALTP07902 379 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 NCLP19338 710 aaKnown RBP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 COL9A1P20849 921 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 AXLP30530 894 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 TOB1P50616 345 aaPredicted RBP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 FXR2P51116 673 aaKnown RBP eCLIP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 TMC7Q7Z402 723 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 ZNF280BQ86YH2 543 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 SMG8Q8ND04 991 aaKnown RBP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 BCL7CQ8WUZ0 217 aaPredicted RBP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 CCDC51Q96ER9 411 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 TMEM169Q96HH4 297 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 EIF2AQ9BY44 585 aaKnown RBP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 POLR3FQ9H1D9 316 aaPredicted RBP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 RSAD1Q9HA92 442 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 GPRC5CQ9NQ84 441 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 DNAJB4Q9UDY4 337 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 CNTNAP2Q9UHC6 1331 aa13.86□□□□□ -0.19
CPSF4-208ENST00000452047 TDRD15B5MCY1 1934 aaKnown RBP13.86□□□□□ -0.19
CPSF4-208ENST00000452047 CARNS1A5YM72 827 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 C2orf71A6NGG8 1288 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 INO80B-WBP1J3KQ70 363 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 INPPL1O15357 1258 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 ST18O60284 1047 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 ARF4P18085 180 aaPredicted RBP13.85□□□□□ -0.19
CPSF4-208ENST00000452047 RNASELQ05823 741 aaKnown RBP13.85□□□□□ -0.19
CPSF4-208ENST00000452047 GNL2Q13823 731 aaKnown RBP13.85□□□□□ -0.19
CPSF4-208ENST00000452047 SMC1AQ14683 1233 aaKnown RBP13.85□□□□□ -0.19
CPSF4-208ENST00000452047 NOTUMQ6P988 496 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 MRPL43Q8N983 215 aaKnown RBP13.85□□□□□ -0.19
CPSF4-208ENST00000452047 CNNM3Q8NE01 707 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 MCPH1Q8NEM0 835 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 ERMNQ8TAM6 284 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 SUSD6Q92537 303 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 IGSF21Q96ID5 467 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 CPB2Q96IY4 423 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 NACC1Q96RE7 527 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 POP1Q99575 1024 aaKnown RBP13.85□□□□□ -0.19
CPSF4-208ENST00000452047 ZBP1Q9H171 429 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 CSRNP2Q9H175 543 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 NOL7Q9UMY1 257 aaKnown RBP13.85□□□□□ -0.19
CPSF4-208ENST00000452047 USP15Q9Y4E8 981 aaPredicted RBP13.85□□□□□ -0.19
CPSF4-208ENST00000452047 IPPQ9Y573 584 aa13.85□□□□□ -0.19
CPSF4-208ENST00000452047 B4GALT5O43286 388 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 GPR37L1O60883 481 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 DDHD2O94830 711 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 MUTP22033 750 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 SLC11A1P49279 550 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 ECM1Q16610 540 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 HAUS3Q68CZ6 603 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 CDCA2Q69YH5 1023 aaPredicted RBP13.84□□□□□ -0.19
CPSF4-208ENST00000452047 DDX53Q86TM3 631 aaKnown RBP13.84□□□□□ -0.19
CPSF4-208ENST00000452047 VPS52Q8N1B4 723 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 URGCPQ8TCY9 931 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 TMX3Q96JJ7 454 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 LRFN3Q9BTN0 628 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 VN1R3Q9BXE9 311 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 GBP3Q9H0R5 595 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 RNF39Q9H2S5 420 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 RAPGEFL1Q9UHV5 662 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 HES2Q9Y543 173 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 PCDHB6Q9Y5E3 794 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 IRAK3Q9Y616 596 aa13.84□□□□□ -0.19
CPSF4-208ENST00000452047 FAM86C2PA6NEL3 165 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 DCXO43602 365 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 POMCP01189 267 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 CTSAP10619 480 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 ITGA4P13612 1032 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 CYP11B2P19099 503 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 PTGDRQ13258 359 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 TMEM31Q5JXX7 168 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 ANKRD54Q6NXT1 300 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 SYCE2Q6PIF2 218 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 PPP4R3CPQ6ZMV5 832 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 MAEAQ7L5Y9 396 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 IGSF22Q8N9C0 903 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 BSNDQ8WZ55 320 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 TMEM175Q9BSA9 504 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 S1PR5Q9H228 398 aa13.83□□□□□ -0.2
CPSF4-208ENST00000452047 NXF3Q9H4D5 531 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms