RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 IPPQ9Y573 584 aa14.1□□□□□ -0.15
PRPF40A-203ENST00000448428 MYH11P35749 1972 aa14.1□□□□□ -0.15
PRPF40A-203ENST00000448428 A0A1B0GUA9 196 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 TTLL13PA6NNM8 815 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 STX6O43752 255 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 BMP1P13497 986 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 NCLP19338 710 aaKnown RBP14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 NAMPTP43490 491 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 KCNQ1P51787 676 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 AFF1P51825 1210 aaKnown RBP14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 ERVFC1P60507 584 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 PLCB3Q01970 1234 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 UBE3AQ05086 875 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 PPP2R5AQ15172 486 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 PTPAQ15257 358 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 FAM187BQ17R55 369 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 AAK1Q2M2I8 961 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 PPP4R3CPQ6ZMV5 832 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 C1orf186Q6ZWK4 172 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 CABP7Q86V35 215 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 CDR2LQ86X02 465 aaPredicted RBP14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 ZBTB8OSQ8IWT0 167 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 CNNM3Q8NE01 707 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 KIFAP3Q92845 792 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 CCDC51Q96ER9 411 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 AK8Q96MA6 479 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 MRPL9Q9BYD2 267 aaKnown RBP14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 NT5C3AQ9H0P0 336 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 C2orf40Q9H1Z8 148 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 UBE2ZQ9H832 354 aaPredicted RBP14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 TBC1D13Q9NVG8 400 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 SPG21Q9NZD8 308 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 INPP5FQ9Y2H2 1132 aa14.09□□□□□ -0.15
PRPF40A-203ENST00000448428 TDRD15B5MCY1 1934 aaKnown RBP14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 NT5C1B-RDH14C9J2C7 533 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 ITGA4P13612 1032 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 GTF2F1P35269 517 aaKnown RBP eCLIP14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 UBA7P41226 1012 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 ALDH7A1P49419 539 aaKnown RBP14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 BCAR1P56945 870 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 HYAL1Q12794 435 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 COL19A1Q14993 1142 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 TMEM119Q4V9L6 283 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 HSCBQ8IWL3 235 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 DAW1Q8N136 415 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 KCTD17Q8N5Z5 321 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 SYT2Q8N9I0 419 aaPredicted RBP14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 DEPTORQ8TB45 409 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 MICAL1Q8TDZ2 1067 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 RSPH1Q8WYR4 309 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 SYMPKQ92797 1274 aaKnown RBP14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 PABPC5Q96DU9 382 aaKnown RBP14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 CDK5RAP3Q96JB5 506 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 IFT74Q96LB3 600 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 PRIMPOLQ96LW4 560 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 KIFC3Q9BVG8 833 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 CCDC113Q9H0I3 377 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 NRDE2Q9H7Z3 1164 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 RSAD1Q9HA92 442 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 PRMT7Q9NVM4 692 aaPredicted RBP14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 USP20Q9Y2K6 914 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 HES2Q9Y543 173 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 PCDHGC5Q9Y5F6 944 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 CNTNAP2Q9UHC6 1331 aa14.08□□□□□ -0.16
PRPF40A-203ENST00000448428 SFI1A8K8P3 1242 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 SLC26A4O43511 780 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 B4GALT3O60512 393 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 HIP1RO75146 1068 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 NPTXRO95502 500 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 SSBP05455 408 aaKnown RBP eCLIP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 LIG1P18858 919 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 KCNA5P22460 613 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 MARCKSP29966 332 aaPredicted RBP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 LONP1P36776 959 aaKnown RBP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 SLC12A3P55017 1021 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 PEX3P56589 373 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 CEBPZQ03701 1054 aaKnown RBP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 KRT17Q04695 432 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 RNASELQ05823 741 aaKnown RBP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 MAPK7Q13164 816 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 PRPF4BQ13523 1007 aaKnown RBP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 MAPK6Q16659 721 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 SLC27A1Q6PCB7 646 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 ADGRD2Q7Z7M1 963 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 ZNF280BQ86YH2 543 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 SLC39A11Q8N1S5 342 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 MRPS27Q92552 414 aaKnown RBP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 ZSCAN16Q9H4T2 348 aaPredicted RBP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 IGFLR1Q9H665 355 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 TLR9Q9NR96 1032 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 DNAJB4Q9UDY4 337 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 PUF60Q9UHX1 559 aaKnown RBP14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 LZTS1Q9Y250 596 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 MYH15Q9Y2K3 1946 aa14.07□□□□□ -0.16
PRPF40A-203ENST00000448428 BRWD1Q9NSI6 2320 aa14.06□□□□□ -0.16
PRPF40A-203ENST00000448428 CCDC169A6NNP5 214 aa14.06□□□□□ -0.16
PRPF40A-203ENST00000448428 ACKR2O00590 384 aa14.06□□□□□ -0.16
PRPF40A-203ENST00000448428 NCK2O43639 380 aa14.06□□□□□ -0.16
PRPF40A-203ENST00000448428 ZC3H11AO75152 810 aaKnown RBP eCLIP14.06□□□□□ -0.16
PRPF40A-203ENST00000448428 DDHD2O94830 711 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms