RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 ZNF853P0CG23 659 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 ZKSCAN1P17029 563 aaPredicted RBP7.18□□□□□ -1.26
USP49-205ENST00000448078 CYP2B6P20813 491 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 MAPK4P31152 587 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 DDR2Q16832 855 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 METTL24Q5JXM2 366 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 MFSD14CQ5VZR4 134 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 ATG14Q6ZNE5 492 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 TMC6Q7Z403 805 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 TRIM59Q8IWR1 403 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 TMEM52Q8NDY8 209 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 GPRC5AQ8NFJ5 357 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 ATXN2LQ8WWM7 1075 aaKnown RBP7.18□□□□□ -1.26
USP49-205ENST00000448078 MCMBPQ9BTE3 642 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 SENP6Q9GZR1 1112 aaPredicted RBP7.18□□□□□ -1.26
USP49-205ENST00000448078 RWDD3Q9Y3V2 267 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 AFG3L2Q9Y4W6 797 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 AOX1Q06278 1338 aa7.18□□□□□ -1.26
USP49-205ENST00000448078 NOTOA8MTQ0 251 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 ENTPD3O75355 529 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 PLS3P13797 630 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 RGS2P41220 211 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 IRX3P78415 501 aaPredicted RBP7.17□□□□□ -1.26
USP49-205ENST00000448078 MOGSQ13724 837 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 CCDC174Q6PII3 467 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 ZNF227Q86WZ6 799 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 ZGPATQ8N5A5 531 aaKnown RBP7.17□□□□□ -1.26
USP49-205ENST00000448078 LZTR1Q8N653 840 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 CELF2-AS1Q8N7Q2 184 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 CHAMP1Q96JM3 812 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 AS3MTQ9HBK9 375 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 PDLIM7Q9NR12 457 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 TMOD4Q9NZQ9 345 aa7.17□□□□□ -1.26
USP49-205ENST00000448078 RPAP1Q9BWH6 1393 aaPredicted RBP7.17□□□□□ -1.26
USP49-205ENST00000448078 ETV2O00321 342 aaPredicted RBP7.16□□□□□ -1.26
USP49-205ENST00000448078 CNGA1P29973 690 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 CCNA1P78396 465 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 MRPS5P82675 430 aaKnown RBP7.16□□□□□ -1.26
USP49-205ENST00000448078 FOXO4P98177 505 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 MESP2Q0VG99 397 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 MAP3K12Q12852 859 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 SF3A1Q15459 793 aaKnown RBP7.16□□□□□ -1.26
USP49-205ENST00000448078 LRRC26Q2I0M4 334 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 AAK1Q2M2I8 961 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 TWISTNBQ3B726 338 aaPredicted RBP7.16□□□□□ -1.26
USP49-205ENST00000448078 SPTY2D1Q68D10 685 aaPredicted RBP7.16□□□□□ -1.26
USP49-205ENST00000448078 CDC42EP5Q6NZY7 148 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 SGPP1Q9BX95 441 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 EPN3Q9H201 632 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 ZNF552Q9H707 407 aaPredicted RBP7.16□□□□□ -1.26
USP49-205ENST00000448078 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.16□□□□□ -1.26
USP49-205ENST00000448078 GULP1Q9UBP9 304 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 GJD2Q9UKL4 321 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 ACSL6Q9UKU0 697 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 DLG5Q8TDM6 1919 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 TTC28Q96AY4 2481 aa7.16□□□□□ -1.26
USP49-205ENST00000448078 KBTBD13C9JR72 458 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 GRM8O00222 908 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 APAF1O14727 1248 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 SEMA7AO75326 666 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 PDE8BO95263 885 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 THBDP07204 575 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 C1QTNF9P0C862 333 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 COL6A1P12109 1028 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 SLC5A1P13866 664 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 MVKQ03426 396 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 SPP2Q13103 211 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 SHHQ15465 462 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 MRM1Q6IN84 353 aaKnown RBP7.15□□□□□ -1.26
USP49-205ENST00000448078 ZC3H14Q6PJT7 736 aaKnown RBP7.15□□□□□ -1.26
USP49-205ENST00000448078 EDC3Q96F86 508 aaKnown RBP7.15□□□□□ -1.26
USP49-205ENST00000448078 TOX2Q96NM4 488 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 NKX2-4Q9H2Z4 354 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 CYP26B1Q9NR63 512 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 ATP11BQ9Y2G3 1177 aa7.15□□□□□ -1.26
USP49-205ENST00000448078 MYBBP1AQ9BQG0 1328 aaKnown RBP7.15□□□□□ -1.26
USP49-205ENST00000448078 UNC80Q8N2C7 3258 aa7.15□□□□□ -1.27
USP49-205ENST00000448078 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.14□□□□□ -1.27
USP49-205ENST00000448078 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.14□□□□□ -1.27
USP49-205ENST00000448078 NPIPB6E9PJ23 425 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 MEFVO15553 781 aaPredicted RBP7.14□□□□□ -1.27
USP49-205ENST00000448078 PEX10O60683 326 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 ALDH1L1O75891 902 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 MAP4K4O95819 1239 aaPredicted RBP7.14□□□□□ -1.27
USP49-205ENST00000448078 EFEMP2O95967 443 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 FUCA1P04066 466 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 MSL3P1P0C860 447 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 HOXC12P31275 282 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 VIPR1P32241 457 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 ERVFRD-1P60508 538 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 RBM10P98175 930 aaKnown RBP7.14□□□□□ -1.27
USP49-205ENST00000448078 CACNB2Q08289 660 aaPredicted RBP7.14□□□□□ -1.27
USP49-205ENST00000448078 RAB33AQ14088 237 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 NR1I3Q14994 352 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 PUM3Q15397 648 aaKnown RBP7.14□□□□□ -1.27
USP49-205ENST00000448078 SLC10A6Q3KNW5 377 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 MAP3K21Q5TCX8 1036 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 PLEKHH3Q7Z736 793 aa7.14□□□□□ -1.27
USP49-205ENST00000448078 ZSCAN18Q8TBC5 510 aaPredicted RBP7.14□□□□□ -1.27
USP49-205ENST00000448078 LPAR1Q92633 364 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms