RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 SIP14410 1827 aa28.86■■■□□ 2.21
LDB1-202ENST00000425280 SNAI1O95863 264 aaPredicted RBP28.85■■■□□ 2.21
LDB1-202ENST00000425280 SCP2P22307 547 aa28.85■■■□□ 2.21
LDB1-202ENST00000425280 ZNF157P51786 506 aaPredicted RBP28.85■■■□□ 2.21
LDB1-202ENST00000425280 ARID5AQ03989 594 aa28.85■■■□□ 2.21
LDB1-202ENST00000425280 GJC2Q5T442 439 aaPredicted RBP28.85■■■□□ 2.21
LDB1-202ENST00000425280 SLC35F6Q8N357 371 aa28.85■■■□□ 2.21
LDB1-202ENST00000425280 FBXL18Q96ME1 805 aa28.85■■■□□ 2.21
LDB1-202ENST00000425280 SMARCAD1Q9H4L7 1026 aa28.85■■■□□ 2.21
LDB1-202ENST00000425280 PCDHA13Q9Y5I0 950 aa28.85■■■□□ 2.21
LDB1-202ENST00000425280 GARTP22102 1010 aa28.85■■■□□ 2.21
LDB1-202ENST00000425280 DRP2Q13474 957 aa28.85■■■□□ 2.21
LDB1-202ENST00000425280 N4BP1O75113 896 aaKnown RBP28.84■■■□□ 2.21
LDB1-202ENST00000425280 SLC26A2P50443 739 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 KLHL30Q0D2K2 578 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 LAMC2Q13753 1193 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 IRF2BP2Q7Z5L9 587 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 LMO3Q8TAP4 145 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 MAML3Q96JK9 1138 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 IFIH1Q9BYX4 1025 aaKnown RBP28.84■■■□□ 2.21
LDB1-202ENST00000425280 CPA4Q9UI42 421 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 IGF2BP3O00425 579 aaKnown RBP eCLIP28.84■■■□□ 2.21
LDB1-202ENST00000425280 GFPT1Q06210 699 aaPredicted RBP28.84■■■□□ 2.21
LDB1-202ENST00000425280 STRN3Q13033 797 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 CAPSQ13938 189 aa28.84■■■□□ 2.21
LDB1-202ENST00000425280 ZNF215Q9UL58 517 aaPredicted RBP28.84■■■□□ 2.21
LDB1-202ENST00000425280 KRT86O43790 486 aa28.83■■■□□ 2.21
LDB1-202ENST00000425280 SLU7O95391 586 aaKnown RBP28.83■■■□□ 2.21
LDB1-202ENST00000425280 GH1P01241 217 aa28.83■■■□□ 2.21
LDB1-202ENST00000425280 GCLMP48507 274 aa28.83■■■□□ 2.21
LDB1-202ENST00000425280 EHBP1Q8NDI1 1231 aa28.83■■■□□ 2.21
LDB1-202ENST00000425280 ADGRA2Q96PE1 1338 aa28.83■■■□□ 2.21
LDB1-202ENST00000425280 RBAK-RBAKDNI3L0D1 243 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 P4HA2O15460 535 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 ADCYAP1R1P41586 468 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 LIG4P49917 911 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 PRPF31Q8WWY3 499 aaKnown RBP28.82■■■□□ 2.2
LDB1-202ENST00000425280 MFSD14AQ96MC6 490 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 USP20Q9Y2K6 914 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 IGKV6-21A0A0C4DH24 114 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 K7ERI5 159 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 MKRN4PQ13434 485 aaPredicted RBP28.82■■■□□ 2.2
LDB1-202ENST00000425280 IER5Q5VY09 327 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 GPD1LQ8N335 351 aa28.82■■■□□ 2.2
LDB1-202ENST00000425280 MANSC4A6NHS7 340 aaPredicted RBP28.81■■■□□ 2.2
LDB1-202ENST00000425280 SLC15A5A6NIM6 579 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 PIGRP01833 764 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 ENOX2Q16206 610 aaKnown RBP28.81■■■□□ 2.2
LDB1-202ENST00000425280 EPC2Q52LR7 807 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 PARD3BQ8TEW8 1205 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 APEX2Q9UBZ4 518 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 DNAJC12Q9UKB3 198 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 TRPC6Q9Y210 931 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 STYXL1Q9Y6J8 313 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 GAS2O43903 313 aaKnown RBP28.81■■■□□ 2.2
LDB1-202ENST00000425280 KIF5AQ12840 1032 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 EXOC8Q8IYI6 725 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 NPLOC4Q8TAT6 608 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 EMID1Q96A84 441 aaPredicted RBP28.81■■■□□ 2.2
LDB1-202ENST00000425280 TSGA10Q9BZW7 698 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 TMEM117Q9H0C3 514 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 TMEM134Q9H6X4 195 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 SUGCTQ9HAC7 445 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 DUSP10Q9Y6W6 482 aa28.81■■■□□ 2.2
LDB1-202ENST00000425280 ZNF236Q9UL36 1845 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 PMM2O15305 246 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 ADCY3O60266 1144 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 HBP1O60381 514 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 PRKCIP41743 596 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 MAGEA1P43355 309 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 CYP24A1Q07973 514 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 CETN1Q12798 172 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 SAPCD2Q86UD0 394 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 TMC2Q8TDI7 906 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 TRAPPC12Q8WVT3 735 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 TCP11Q8WWU5 503 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 TINF2Q9BSI4 451 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 STK33Q9BYT3 514 aa28.8■■■□□ 2.2
LDB1-202ENST00000425280 BZW2Q9Y6E2 419 aaKnown RBP28.8■■■□□ 2.2
LDB1-202ENST00000425280 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.79■■■□□ 2.2
LDB1-202ENST00000425280 LRRC71Q8N4P6 559 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 PPTC7Q8NI37 304 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 CCDC127Q96BQ5 260 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 ERAP1Q9NZ08 941 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 DAAM1Q9Y4D1 1078 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 CTAGE9A4FU28 777 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 LRRIQ3A6PVS8 624 aaPredicted RBP28.79■■■□□ 2.2
LDB1-202ENST00000425280 LGALS2P05162 132 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 MXI1P50539 228 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 PTK2Q05397 1052 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 PHLDB3Q6NSJ2 640 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 RGMBQ6NW40 437 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 FAM213AQ9BRX8 229 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 RNPEPQ9H4A4 650 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 ZCCHC17Q9NP64 241 aaKnown RBP28.79■■■□□ 2.2
LDB1-202ENST00000425280 MRFAP1Q9Y605 127 aa28.79■■■□□ 2.2
LDB1-202ENST00000425280 F8VZ95 297 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 EDN1P05305 212 aa28.78■■■□□ 2.2
LDB1-202ENST00000425280 PNMA6AP0CW24 399 aaPredicted RBP28.78■■■□□ 2.2
LDB1-202ENST00000425280 STAT1P42224 750 aa28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms