RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 CYP19A1P11511 503 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 RPL13P26373 211 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 CRKLP46109 303 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 NEK4P51957 841 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 LACTBP83111 547 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 CALD1Q05682 793 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 CFAP100Q494V2 611 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 PRR31Q5SQ13 230 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 NT5DC1Q5TFE4 455 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 DDX53Q86TM3 631 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF761Q86XN6 746 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 COL23A1Q86Y22 540 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 DNAJC10Q8IXB1 793 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 NLGN4XQ8N0W4 816 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 NGEFQ8N5V2 710 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 DTX3Q8N9I9 347 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 DOT1LQ8TEK3 1739 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF496Q96IT1 587 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 WNK4Q96J92 1243 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 TARS2Q9BW92 718 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 DLL4Q9NR61 685 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 ARHGAP20Q9P2F6 1191 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 ARHGAP28Q9P2N2 729 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 NUB1Q9Y5A7 615 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 RREB1Q92766 1687 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 MRC1P22897 1456 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 A0A0G2JLL6 359 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 SLC12A8A0AV02 714 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 PTPDC1A2A3K4 754 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF839A8K0R7 811 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 CHL1O00533 1208 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 KCNQ3O43525 872 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 SNRPA1P09661 255 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 TTLL7Q6ZT98 887 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 KIAA0907Q7Z7F0 614 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 NXPE1Q8N323 547 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 SYNPOQ8N3V7 929 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 CHST14Q8NCH0 376 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 ADAMTS17Q8TE56 1095 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 DDX1Q92499 740 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 NINJ1Q92982 152 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 TMEM209Q96SK2 561 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 KRTAP9-9Q9BYP9 154 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 KRTAP9-4Q9BYQ2 154 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 NGRNQ9NPE2 291 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 RRP7AQ9Y3A4 280 aaKnown RBP3.18□□□□□ -1.9
VPS13A-208ENST00000423463 HEG1Q9ULI3 1381 aa3.18□□□□□ -1.9
VPS13A-208ENST00000423463 TOGARAM1Q9Y4F4 1720 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 ITGB4P16144 1822 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 ADAMTS7Q9UKP4 1686 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 IL18BPO95998 194 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 C4BPAP04003 597 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 PTX3P26022 381 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 POLD1P28340 1107 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 KCNC1P48547 511 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 SARSP49591 514 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 MECP2P51608 486 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 KIF11P52732 1056 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 EIF4A1P60842 406 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 SEPT7Q16181 437 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 LCE4AQ5TA78 99 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 CDCA2Q69YH5 1023 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 TRMT10BQ6PF06 316 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 THUMPD2Q9BTF0 503 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 BOCQ9BWV1 1114 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 PDGFDQ9GZP0 370 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 XYLT2Q9H1B5 865 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 L2HGDHQ9H9P8 463 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 PARD6AQ9NPB6 346 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 MIS18AQ9NYP9 233 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 BTBD7Q9P203 1132 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 MAGEC2Q9UBF1 373 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 LY75O60449 1722 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 NUP188Q5SRE5 1749 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 SCN11AQ9UI33 1791 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 DVL2O14641 736 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 CLASP2O75122 1294 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 HIP1RO75146 1068 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 SASH1O94885 1247 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 FBXO21O94952 628 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 CLSTN1O94985 981 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 COL6A1P12109 1028 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF28P17035 718 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 RFC4P35249 363 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 ADCY8P40145 1251 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 IL6STP40189 918 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 EIF5P55010 431 aaKnown RBP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 GNAI1P63096 354 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 PCBP1Q15365 356 aaKnown RBP eCLIP3.17□□□□□ -1.9
VPS13A-208ENST00000423463 CATSPEREQ5SY80 951 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 LRSAM1Q6UWE0 723 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 GPR155Q7Z3F1 870 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 SIAH1Q8IUQ4 282 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 SP8Q8IXZ3 490 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 FAM9BQ8IZU0 186 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 UBR7Q8N806 425 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 TTLL6Q8N841 843 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 ASB15Q8WXK1 588 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 C20orf173Q96LM9 149 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 CABP5Q9NP86 173 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms