RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CHUKO15111 745 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 TRIM16O95361 564 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 KRT14P02533 472 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 HMOX2P30519 316 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ANXA11P50995 505 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 POU5F1BQ06416 359 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 CEP55Q53EZ4 464 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 SPON2Q9BUD6 331 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 OSBPL10Q9BXB5 764 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 IPPQ9Y573 584 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 MYH11P35749 1972 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 TNPO2O14787 897 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ZRANB2O95218 330 aaKnown RBP eCLIP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 NDUFA8P51970 172 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 GRAMD1BQ3KR37 738 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 BBS9Q3SYG4 887 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ARL8AQ96BM9 186 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 MRPL48Q96GC5 212 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 GINM1Q9NU53 330 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 NMRK1Q9NWW6 199 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 SMARCAL1Q9NZC9 954 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 WARS2Q9UGM6 360 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 TEX28O15482 410 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 CTNND1O60716 968 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ATP1A1P05023 1023 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 IL10P22301 178 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 PDIA3P30101 505 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 AKT1P31749 480 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 SLC16A2P36021 539 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 SPDYAQ5MJ70 313 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ARL6IP4Q66PJ3 421 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 SNRNP48Q6IEG0 339 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ZNF555Q8NEP9 628 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 OR6P1Q8NGX9 317 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 OSCP1Q8WVF1 389 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 FANCLQ9NW38 375 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 SLC25A13Q9UJS0 675 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 PSMA4P25789 261 aaKnown RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ORC2Q13416 577 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-204ENST00000423058 DMC1Q14565 340 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 CATSPER1Q8NEC5 780 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 MUC3BQ9H195 1237 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 MAD2L2Q9UI95 211 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 ANAPC7Q9UJX3 599 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 NDUFB9Q9Y6M9 179 aa7.27□□□□□ -1.25
SCN1A-204ENST00000423058 PNMA6EA0A0J9YXQ4 647 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 BTBD18B2RXH4 712 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 RNASEH1O60930 286 aaKnown RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 TMED1Q13445 227 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 DUOXA2Q1HG44 320 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 PPP1R18Q6NYC8 613 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 ADCK2Q7Z695 626 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 CDKL3Q8IVW4 592 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 PPP1R14AQ96A00 147 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 NHEJ1Q9H9Q4 299 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 RNF181Q9P0P0 153 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 EFCAB6Q5THR3 1501 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 TK2O00142 265 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 CARSP49589 748 aaKnown RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 AP2B1P63010 937 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 ROR1Q01973 937 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 IFT88Q13099 833 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 TMEM132BQ14DG7 1078 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 PLEKHA8Q96JA3 519 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 DESI2Q9BSY9 194 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 ZSWIM6Q9HCJ5 1215 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 NRBP1Q9UHY1 535 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 CFAP99D6REC4 459 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 ADD1P35611 737 aaKnown RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 PPP3CCP48454 512 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 EPM2AIP1Q7L775 607 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 KSR1Q8IVT5 923 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 DDIASQ8IXT1 998 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 KRT78Q8N1N4 520 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 OXCT2Q9BYC2 517 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 GOLPH3LQ9H4A5 285 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 PTCH1Q13635 1447 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 POLR1AO95602 1720 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 WDR91A4D1P6 747 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 GYG2O15488 501 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 PJA2O43164 708 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 STAT3P40763 770 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 ZKSCAN8Q15776 578 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 SYT2Q8N9I0 419 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 APOL1O14791 398 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 CDK8P49336 464 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 RGS4P49798 205 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 DDX42Q86XP3 938 aaKnown RBP eCLIP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 UNC5CLQ8IV45 518 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 UCMAQ8WVF2 138 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 MED15Q96RN5 788 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 GOLGA4Q13439 2230 aaKnown RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 MIF4GDA9UHW6 222 aaKnown RBP7.26□□□□□ -1.25
SCN1A-204ENST00000423058 CENPAP49450 140 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 C8orf34Q49A92 452 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 AP1ARQ63HQ0 302 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 SKA1Q96BD8 255 aa7.26□□□□□ -1.25
SCN1A-204ENST00000423058 ADA2Q9NZK5 511 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms