RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 TRIM49P0CI25 452 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 TRIM49CP0CI26 452 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 KCNJ1P48048 391 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 SATB1Q01826 763 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 ANKRD42Q8N9B4 389 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 ETNPPLQ8TBG4 499 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 TBC1D16Q8TBP0 767 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 SLC20A1Q8WUM9 679 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 SPDL1Q96EA4 605 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 PLIN4Q96Q06 1357 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 SUN1O94901 812 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 ZKSCAN8Q15776 578 aaPredicted RBP22.9■■□□□ 1.26
USP48-205ENST00000421625 CROCCP2Q86T23 111 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 ZNF622Q969S3 477 aaKnown RBP eCLIP22.9■■□□□ 1.267e-10■□□□□ 10.2
USP48-205ENST00000421625 P2RX7Q99572 595 aaKnown RBP22.9■■□□□ 1.26
USP48-205ENST00000421625 BATF3Q9NR55 127 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 CTTNBP2NLQ9P2B4 639 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 FRMPD4Q14CM0 1322 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 BTAF1O14981 1849 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 IGKV6D-41A0A0C4DH26 115 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 PODXLO00592 558 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 PPP1R12AO14974 1030 aaPredicted RBP22.89■■□□□ 1.26
USP48-205ENST00000421625 TBCAO75347 108 aaKnown RBP22.89■■□□□ 1.26
USP48-205ENST00000421625 ALAS1P13196 640 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 RPA1P27694 616 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 NMT1P30419 496 aaKnown RBP22.89■■□□□ 1.26
USP48-205ENST00000421625 ZNF131P52739 623 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 ZC2HC1CQ53FD0 456 aaPredicted RBP22.89■■□□□ 1.26
USP48-205ENST00000421625 MFSD5Q6N075 450 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 VSTM1Q6UX27 236 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 SLFN12Q8IYM2 578 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 FITM2Q8N6M3 262 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 GDAP1Q8TB36 358 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 POP1Q99575 1024 aaKnown RBP22.89■■□□□ 1.26
USP48-205ENST00000421625 NAP1L4Q99733 375 aaKnown RBP22.89■■□□□ 1.26
USP48-205ENST00000421625 HOMER3Q9NSC5 361 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 CTNNAL1Q9UBT7 734 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 PARP2Q9UGN5 583 aa22.89■■□□□ 1.26
USP48-205ENST00000421625 ACSL3O95573 720 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 TTLL1O95922 423 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 SLMAPQ14BN4 828 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 FAM196AQ6ZSG2 479 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 CPNE8Q86YQ8 564 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 CCDC105Q8IYK2 499 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 ARHGEF2Q92974 986 aaKnown RBP22.89■■□□□ 1.25
USP48-205ENST00000421625 ART4Q93070 314 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 CRAMP1Q96RY5 1269 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 ZSWIM1Q9BR11 485 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 INTS2Q9H0H0 1204 aaKnown RBP22.89■■□□□ 1.25
USP48-205ENST00000421625 LRRC4BQ9NT99 713 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 BCS1LQ9Y276 419 aa22.89■■□□□ 1.25
USP48-205ENST00000421625 CCND1P24385 295 aa22.88■■□□□ 1.25
USP48-205ENST00000421625 PSMC2P35998 433 aaKnown RBP22.88■■□□□ 1.25
USP48-205ENST00000421625 SLC5A4Q9NY91 659 aa22.88■■□□□ 1.25
USP48-205ENST00000421625 GH1P01241 217 aa22.88■■□□□ 1.25
USP48-205ENST00000421625 MAP2K1Q02750 393 aaPredicted RBP22.88■■□□□ 1.25
USP48-205ENST00000421625 CTTNQ14247 550 aaKnown RBP22.88■■□□□ 1.25
USP48-205ENST00000421625 UBL4BQ8N7F7 174 aa22.88■■□□□ 1.25
USP48-205ENST00000421625 RMDN2Q96LZ7 410 aa22.88■■□□□ 1.25
USP48-205ENST00000421625 ARHGEF3Q9NR81 526 aa22.88■■□□□ 1.25
USP48-205ENST00000421625 CYP3A7-CYP3A51PA0A087WV96 503 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 SLC26A4O43511 780 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 PYGMP11217 842 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 CYP3A7P24462 503 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 MSH2P43246 934 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 LLGL1Q15334 1064 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 ERMNQ8TAM6 284 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 CDC42EP4Q9H3Q1 356 aaKnown RBP22.87■■□□□ 1.25
USP48-205ENST00000421625 FOXN3O00409 490 aaPredicted RBP22.87■■□□□ 1.25
USP48-205ENST00000421625 CLUL1Q15846 466 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 SPATA21Q7Z572 469 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 MBOAT7Q96N66 472 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 KCNK9Q9NPC2 374 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 ADAM22Q9P0K1 906 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 APEX2Q9UBZ4 518 aa22.87■■□□□ 1.25
USP48-205ENST00000421625 RAD21O60216 631 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 COMTP21964 271 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 GBP1P32455 592 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 COILP38432 576 aaPredicted RBP22.86■■□□□ 1.25
USP48-205ENST00000421625 MESDQ14696 234 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 QRICH1Q2TAL8 776 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 PCDHA1Q9Y5I3 950 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 FTLP02792 175 aaPredicted RBP22.86■■□□□ 1.25
USP48-205ENST00000421625 HSPA6P17066 643 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 GCKP35557 465 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 PEX5P50542 639 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 CYP2J2P51589 502 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 ARHGAP4P98171 946 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 GABPAQ06546 454 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 MPP2Q14168 576 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 RC3H1Q5TC82 1133 aaKnown RBP22.86■■□□□ 1.25
USP48-205ENST00000421625 PHLDB3Q6NSJ2 640 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 ZNF746Q6NUN9 644 aaPredicted RBP22.86■■□□□ 1.25
USP48-205ENST00000421625 TPTE2Q6XPS3 522 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 RHOT2Q8IXI1 618 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 AGPAT1Q99943 283 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 QTRT2Q9H974 415 aaKnown RBP22.86■■□□□ 1.25
USP48-205ENST00000421625 CD209Q9NNX6 404 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 ARL2BPQ9Y2Y0 163 aa22.86■■□□□ 1.25
USP48-205ENST00000421625 MIF4GDA9UHW6 222 aaKnown RBP22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms