RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TNFRSF25Q93038 417 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 MPP4Q96JB8 637 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 LRFN3Q9BTN0 628 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 NR2E3Q9Y5X4 410 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 ADGRF5Q8IZF2 1346 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 KRBA1A5PL33 1030 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 TGM5O43548 720 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 C5AR1P21730 350 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 HOXC12P31275 282 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 GRK3P35626 688 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 LTBRP36941 435 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 GALNT1Q10472 559 aaPredicted RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 TLDC1Q6P9B6 456 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 DRC7Q8IY82 874 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 GPR161Q8N6U8 529 aaKnown RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 ATG16L2Q8NAA4 619 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 KREMEN2Q8NCW0 462 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 DIS3LQ8TF46 1054 aaKnown RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 KAT5Q92993 513 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 FAM167BQ9BTA0 163 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 ATXN3LQ9H3M9 355 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 CYP4F12Q9HCS2 524 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 GPRC5BQ9NZH0 403 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 LRFN1Q9P244 771 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 ADAM30Q9UKF2 790 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 USP18Q9UMW8 372 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 FAM155AB1AL88 458 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 NDUFS2O75306 463 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 SYPP08247 313 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 AK2P54819 239 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 HNRNPUQ00839 825 aaKnown RBP eCLIP3.02□□□□□ -1.93
MCF2-204ENST00000414978 CRY1Q16526 586 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 PHF19Q5T6S3 580 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 RTN4RL1Q86UN2 441 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 C16orf71Q8IYS4 520 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 KLHL23Q8NBE8 558 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 PPP1R13LQ8WUF5 828 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 RSPH9Q9H1X1 276 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 SEMA6CQ9H3T2 930 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 SLAMF7Q9NQ25 335 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 IFT80Q9P2H3 777 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 SSC5DA1L4H1 1573 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 MAP3K19Q56UN5 1328 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CA12O43570 354 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 HIP1RO75146 1068 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 TMEM127O75204 238 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CST3P01034 146 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 KITP10721 976 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 ZEB1P37275 1124 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 PIK3CBP42338 1070 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 STT3AP46977 705 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 PFKPQ01813 784 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 GRIN1Q05586 938 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 SOX4Q06945 474 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 MAP4K2Q12851 820 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 TUSC3Q13454 348 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CCDC70Q6NSX1 233 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CHSY3Q70JA7 882 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 WAPLQ7Z5K2 1190 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 RASSF3Q86WH2 238 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 RNF152Q8N8N0 203 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CXorf38Q8TB03 319 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 FBXW5Q969U6 566 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 UNKQ9C0B0 810 aaKnown RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 ZSWIM5Q9P217 1185 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 ACAD8Q9UKU7 415 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 SIT1Q9Y3P8 196 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CEP83Q9Y592 693 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 PAPPA2Q9BXP8 1791 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CACNA1SQ13698 1873 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 TTC21AQ8NDW8 1320 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 MTA2O94776 668 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 FUCA1P04066 466 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CKMP06732 381 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 SDHBP21912 280 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 GPR3P46089 330 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 G3BP1Q13283 466 aaKnown RBP eCLIP3.02□□□□□ -1.93
MCF2-204ENST00000414978 KIR3DS1Q14943 382 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CCDC38Q502W7 563 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 RRP12Q5JTH9 1297 aaKnown RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 PRAMEF9Q5VWM5 478 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 RRAGBQ5VZM2 374 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 LBX2Q6XYB7 198 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 HEATR4Q86WZ0 1026 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 KIAA0319LQ8IZA0 1049 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 KCT2Q8NC54 265 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 PIP4K2CQ8TBX8 421 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 RSPH1Q8WYR4 309 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 TTLL2Q9BWV7 592 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 COL25A1Q9BXS0 654 aaPredicted RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 FAM204AQ9H8W3 233 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 BLOC1S4Q9NUP1 217 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 TRMT13Q9NUP7 481 aaKnown RBP3.02□□□□□ -1.93
MCF2-204ENST00000414978 GIMAP2Q9UG22 337 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 TUBD1Q9UJT1 453 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 CEP131Q9UPN4 1083 aa3.02□□□□□ -1.93
MCF2-204ENST00000414978 RTL1A6NKG5 1358 aa3.01□□□□□ -1.93
MCF2-204ENST00000414978 KDRP35968 1356 aa3.01□□□□□ -1.93
MCF2-204ENST00000414978 PSME4Q14997 1843 aa3.01□□□□□ -1.93
MCF2-204ENST00000414978 POM121BA6NF01 834 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms