RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 KIAA0391O15091 583 aaKnown RBP9.79□□□□□ -0.84
LIG4-202ENST00000405925 GAS2O43903 313 aaKnown RBP9.79□□□□□ -0.84
LIG4-202ENST00000405925 PLA2G6O60733 806 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 CBX1P83916 185 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 CDC42EP1Q00587 391 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 KIZQ2M2Z5 673 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 ATP8B4Q8TF62 1192 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 COPS5Q92905 334 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 CCDC77Q9BR77 488 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 ZBED2Q9BTP6 218 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 KCNMB3Q9NPA1 279 aa9.79□□□□□ -0.84
LIG4-202ENST00000405925 BTBD19C9JJ37 291 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 CSDE1O75534 798 aaKnown RBP9.78□□□□□ -0.84
LIG4-202ENST00000405925 INSRRP14616 1297 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 KCNA3P22001 575 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 YY1P25490 414 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 CXCR5P32302 372 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 FXR1P51114 621 aaKnown RBP eCLIP9.78□□□□□ -0.84
LIG4-202ENST00000405925 KAZNQ674X7 775 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 RBM43Q6ZSC3 357 aaKnown RBP9.78□□□□□ -0.84
LIG4-202ENST00000405925 TOGARAM2Q6ZUX3 1019 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 OTUD6BQ8N6M0 293 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 TRAPPC12Q8WVT3 735 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 CBWD1Q9BRT8 395 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 UTP11Q9Y3A2 253 aaKnown RBP9.78□□□□□ -0.84
LIG4-202ENST00000405925 ITGB4P16144 1822 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 ATP9AO75110 1047 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 GAS8O95995 478 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 VTNP04004 478 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 SLC9A1P19634 815 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 SLC26A2P50443 739 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 GFPT1Q06210 699 aaPredicted RBP9.78□□□□□ -0.84
LIG4-202ENST00000405925 NOGQ13253 232 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 ACVR2BQ13705 512 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 WHAMMP3Q1A5X7 153 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 ERICH1Q86X53 443 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 TMEM35BQ8NCS4 154 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 SCFD1Q8WVM8 642 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 PDE11AQ9HCR9 933 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 MRPL47Q9HD33 250 aaKnown RBP9.78□□□□□ -0.84
LIG4-202ENST00000405925 ADAM22Q9P0K1 906 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 AGAP1Q9UPQ3 857 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 MYH14Q7Z406 1995 aaKnown RBP9.78□□□□□ -0.84
LIG4-202ENST00000405925 TBXAS1P24557 533 aaPredicted RBP9.78□□□□□ -0.84
LIG4-202ENST00000405925 ZNF484Q5JVG2 852 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 GJC2Q5T442 439 aaPredicted RBP9.78□□□□□ -0.84
LIG4-202ENST00000405925 TTI2Q6NXR4 508 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 GLYCTKQ8IVS8 523 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 SOCS4Q8WXH5 440 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 TSC1Q92574 1164 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 C11orf70Q9BRQ4 267 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 TINF2Q9BSI4 451 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 MKNK1Q9BUB5 465 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 AGPAT5Q9NUQ2 364 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 AFG3L2Q9Y4W6 797 aa9.78□□□□□ -0.84
LIG4-202ENST00000405925 PSMD10O75832 226 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 YBX3P16989 372 aaKnown RBP eCLIP9.77□□□□□ -0.84
LIG4-202ENST00000405925 GUCY2CP25092 1073 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 CASP4P49662 377 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 JAG1P78504 1218 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 TMEM119Q4V9L6 283 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 CCDC60Q8IWA6 550 aaPredicted RBP9.77□□□□□ -0.84
LIG4-202ENST00000405925 SIX6OS1Q8N1H7 587 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 TNFRSF25Q93038 417 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 TMEM106CQ9BVX2 250 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 SETD4Q9NVD3 440 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 UBIAD1Q9Y5Z9 338 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 USP54Q70EL1 1684 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 UBE4BO95155 1302 aa9.77□□□□□ -0.84
LIG4-202ENST00000405925 C17orf102A2RUQ5 167 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 NCOA4Q13772 614 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 MTF1Q14872 753 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 NR1I3Q14994 352 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 ERCC6LQ2NKX8 1250 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 CFAP58Q5T655 872 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 ZNF720Q7Z2F6 126 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 TLK2Q86UE8 772 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 CBWD2Q8IUF1 395 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 RPUSD2Q8IZ73 545 aaKnown RBP9.77□□□□□ -0.85
LIG4-202ENST00000405925 UBLCP1Q8WVY7 318 aaPredicted RBP9.77□□□□□ -0.85
LIG4-202ENST00000405925 HVCN1Q96D96 273 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 HINFPQ9BQA5 517 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 COMMD10Q9Y6G5 202 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 UCHL3P15374 230 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 NAMPTP43490 491 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 HIRAP54198 1017 aaPredicted RBP9.77□□□□□ -0.85
LIG4-202ENST00000405925 PRAMEF19Q5SWL8 479 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 GPR142Q7Z601 462 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 KIAA0895Q8NCT3 520 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 MAIP1Q8WWC4 291 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 GDAP1L1Q96MZ0 367 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 CHP1Q99653 195 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 SEMA6BQ9H3T3 888 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 CNOT8Q9UFF9 292 aaKnown RBP9.77□□□□□ -0.85
LIG4-202ENST00000405925 CDC23Q9UJX2 597 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 CAPN11Q9UMQ6 739 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 SNX9Q9Y5X1 595 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 COL22A1Q8NFW1 1626 aaPredicted RBP9.77□□□□□ -0.85
LIG4-202ENST00000405925 AKR1A1P14550 325 aa9.77□□□□□ -0.85
LIG4-202ENST00000405925 GNA15P30679 374 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms