RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SMC1BQ8NDV3 1235 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 ACRBPQ8NEB7 543 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 KCTD13Q8WZ19 329 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 GCC1Q96CN9 775 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 CDK5RAP1Q96SZ6 601 aaKnown RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 LGR4Q9BXB1 951 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 SMOC1Q9H4F8 434 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 RETREG1Q9H6L5 497 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 SRRDQ9UH36 339 aa4.89□□□□□ -1.63
HMGB1-204ENST00000399489 TMEFF2Q9UIK5 374 aaPredicted RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 LRRFIP2Q9Y608 721 aaKnown RBP4.89□□□□□ -1.63
HMGB1-204ENST00000399489 TCRBV5S2A0A599 114 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 TBX1O43435 398 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 IL33O95760 270 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 ZNF20P17024 532 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 ZNF28P17035 718 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 HSPA6P17066 643 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 CAPN3P20807 821 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 GFRA1P56159 465 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 IL2P60568 153 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 ZBED6P86452 979 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 CYP4F22Q6NT55 531 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 ZCCHC8Q6NZY4 707 aaKnown RBP4.88□□□□□ -1.63
HMGB1-204ENST00000399489 FAM180BQ6P0A1 224 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 ARHGEF18Q6ZSZ5 1173 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 UBE2R2Q712K3 238 aaPredicted RBP4.88□□□□□ -1.63
HMGB1-204ENST00000399489 GPR155Q7Z3F1 870 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 CCDC103Q8IW40 242 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 OR8H2Q8N162 312 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 KREMEN2Q8NCW0 462 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 AHCYL2Q96HN2 611 aaKnown RBP4.88□□□□□ -1.63
HMGB1-204ENST00000399489 FAXDC2Q96IV6 333 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 ZSWIM3Q96MP5 696 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 NELL2Q99435 816 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 C1QTNF3Q9BXJ4 246 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 BARX1Q9HBU1 254 aaPredicted RBP4.88□□□□□ -1.63
HMGB1-204ENST00000399489 MYOTQ9UBF9 498 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 GJD2Q9UKL4 321 aa4.88□□□□□ -1.63
HMGB1-204ENST00000399489 C1QTNF3-AMACRE9PGA6 284 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 CTNND1O60716 968 aaKnown RBP4.87□□□□□ -1.63
HMGB1-204ENST00000399489 TADA3O75528 432 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 FKBP9O95302 570 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 ZBED1O96006 694 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 VCAM1P19320 739 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 CHKAP35790 457 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 ZXDAP98168 799 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 ADAM9Q13443 819 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 ZNF267Q14586 743 aaPredicted RBP4.87□□□□□ -1.63
HMGB1-204ENST00000399489 PRSS53Q2L4Q9 553 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 RRP12Q5JTH9 1297 aaKnown RBP4.87□□□□□ -1.63
HMGB1-204ENST00000399489 SPECC1Q5M775 1068 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 IFIT1BQ5T764 474 aaKnown RBP4.87□□□□□ -1.63
HMGB1-204ENST00000399489 TLDC1Q6P9B6 456 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 TRMT10BQ6PF06 316 aaKnown RBP4.87□□□□□ -1.63
HMGB1-204ENST00000399489 TEPPQ6URK8 271 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 FKBP9P1Q75LS8 142 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 SRGAP1Q7Z6B7 1085 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 KIF18BQ86Y91 864 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 KIAA1958Q8N8K9 716 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 NELL1Q92832 810 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 WNK4Q96J92 1243 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 CCDC138Q96M89 665 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 SYT3Q9BQG1 590 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 CENPOQ9BU64 300 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 WDR12Q9GZL7 423 aaKnown RBP4.87□□□□□ -1.63
HMGB1-204ENST00000399489 EMC7Q9NPA0 242 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 RRN3Q9NYV6 651 aa4.87□□□□□ -1.63
HMGB1-204ENST00000399489 hCG_1642624A0A1W2PR95 340 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 B4E1Z4 1266 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 K7ENM7 598 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 M0R3H8 397 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 NCAM2O15394 837 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PCDHGA12O60330 932 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 MBD4O95243 580 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 CFBP00751 764 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 HRGP04196 525 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 POLD1P28340 1107 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 CYP4F3Q08477 520 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 MAP4K2Q12851 820 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 FAPQ12884 760 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 SART3Q15020 963 aaKnown RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PDCD2Q16342 344 aaPredicted RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 NBPF8Q3BBV2 869 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 INTS11Q5TA45 600 aaKnown RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 ZSCAN30Q86W11 494 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 CIR1Q86X95 450 aaPredicted RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 KLHL36Q8N4N3 616 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 TMEM145Q8NBT3 493 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 ARRDC4Q8NCT1 418 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 DEPTORQ8TB45 409 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PTPRN2Q92932 1015 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 SECISBP2LQ93073 1101 aaKnown RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 KIAA1586Q9HCI6 787 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 AGO4Q9HCK5 861 aaKnown RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 ALG13Q9NP73 1137 aaKnown RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 CWC25Q9NXE8 425 aaPredicted RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PDP2Q9P2J9 529 aa4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PCDHGA9Q9Y5G4 932 aaKnown RBP4.86□□□□□ -1.63
HMGB1-204ENST00000399489 PCDHGA8Q9Y5G5 932 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms