RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 DCTN4Q9UJW0 460 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 FOXP2O15409 715 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 VAMP7P51809 220 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 BYSLQ13895 437 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 SUPT20HL1Q3ZLR7 823 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ENOSF1Q7L5Y1 443 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 SRLQ86TD4 932 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 FAM161BQ96MY7 647 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 AP5M1Q9H0R1 490 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ATP6V0A4Q9HBG4 840 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 MLXIPLQ9NP71 852 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 SUCLA2Q9P2R7 463 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 MAFGO15525 162 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 CCDC22O60826 627 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 OSBPP22059 807 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 SMARCA1P28370 1054 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ST13P50502 369 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 CCZ1BP86790 482 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 CCZ1P86791 482 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 MORF4L2Q15014 288 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 PPM1NQ8N819 430 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 STAMBPL1Q96FJ0 436 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 C10orf88Q9H8K7 445 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 IP6K2Q9UHH9 426 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 UNC13AQ9UPW8 1703 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 USP17L5A8MUK1 530 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 SRGAP2CP0DJJ0 459 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ANXA13P27216 316 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 E4F1Q66K89 784 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 CLEC4GQ6UXB4 293 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 KCNV2Q8TDN2 545 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 GCOM2Q9BZD3 368 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 VPS11Q9H270 941 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 TBC1D22BQ9NU19 505 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 BARHL2Q9NY43 387 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 TTC7AQ9ULT0 858 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ATP11BQ9Y2G3 1177 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 L3MBTL1Q9Y468 752 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ROBO2Q9HCK4 1378 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 MYO5CQ9NQX4 1742 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 A0A1B0GTH6 734 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 POTECB2RU33 542 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 CYP2D6P10635 497 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 RAD23BP54727 409 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 EPHB1P54762 984 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 STAT4Q14765 748 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 RGS9BPQ6ZS82 235 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 RNF25Q96BH1 459 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 FAM167AQ96KS9 214 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 UBE4BO95155 1302 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ITIH6Q6UXX5 1313 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 CLDN3O15551 220 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 CYP2C19P33261 490 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 HSPA9P38646 679 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 MDH1P40925 334 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ARHGDIAP52565 204 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 EAPPQ56P03 285 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 TMEM270Q6UE05 265 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 ING2Q9H160 280 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 PBRM1Q86U86 1689 aa10.89□□□□□ -0.67
LIMCH1-203ENST00000396595 BAG6P46379 1132 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 GPS1Q13098 491 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 FAM196AQ6ZSG2 479 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 METTL16Q86W50 562 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 OR6B3Q8NGW1 331 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 SH3RF3Q8TEJ3 882 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 TRPV6Q9H1D0 765 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 KCNF1Q9H3M0 494 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 DDX56Q9NY93 547 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 CEP170Q5SW79 1584 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 AGTP01019 485 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 KRT76Q01546 638 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 MTF1Q14872 753 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 HDDC2Q7Z4H3 204 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 FRMD5Q7Z6J6 570 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 THNSL1Q8IYQ7 743 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 NLRP4Q96MN2 994 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 EPN3Q9H201 632 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 SNX5Q9Y5X3 404 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 KDM6BO15054 1643 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 CFAP74Q9C0B2 1584 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 PDIA2Q13087 525 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 ZNF699Q32M78 642 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 IZUMO3Q5VZ72 239 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 LRIG3Q6UXM1 1119 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 CDHR2Q9BYE9 1310 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 ASAP2O43150 1006 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 TRIM16O95361 564 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 ASNSP08243 561 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 ZSCAN20P17040 1043 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 DPY19L2Q6NUT2 758 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 DPF2Q92785 391 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 OPTNQ96CV9 577 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 RNPC3Q96LT9 517 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 DCP1AQ9NPI6 582 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 ARL2BPQ9Y2Y0 163 aa10.88□□□□□ -0.67
LIMCH1-203ENST00000396595 SSU72P8A0A1W2PR75 194 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms