RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 EFHC2Q5JST6 749 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 CCDC137Q6PK04 289 aaKnown RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 SYDE1Q6ZW31 735 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 TRIM59Q8IWR1 403 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 FMR1NBQ8N0W7 255 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 TTC17Q96AE7 1141 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 SNF8Q96H20 258 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 SPATA33Q96N06 139 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 NUP85Q9BW27 656 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 SCHIP1Q9P0W5 487 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 NEDD4P46934 1319 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 LRRC53A6NM62 1247 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 CYB5R4Q7L1T6 521 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 PIP4K2CQ8TBX8 421 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 LZICQ8WZA0 190 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 AIFM3Q96NN9 605 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 GDAQ9Y2T3 454 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 PCDHA10Q9Y5I2 948 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 KDM6AO15550 1401 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 SYCE1LA8MT33 242 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 TRAPPC3O43617 180 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 AP1B1Q10567 949 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 TSSK1BQ9BXA7 367 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 FAM49AQ9H0Q0 323 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 TDRD3Q9H7E2 651 aaKnown RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 SRP68Q9UHB9 627 aaKnown RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 PLAAQ9Y263 795 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 PNPLA7Q6ZV29 1317 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L15C9J2P7 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L13C9JLJ4 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L11C9JVI0 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L18D6R9N7 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L22D6RA61 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L17D6RBQ6 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L19D6RCP7 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L20D6RJB6 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 SPAG7O75391 227 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 MCF2P10911 925 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 PEX19P40855 299 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 HSD17B4P51659 736 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 PMS2P54278 862 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L24Q0WX57 530 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 LAMB3Q13751 1172 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 SWSAP1Q6NVH7 229 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 USP17L6PQ6QN14 398 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 ANGPTL8Q6UXH0 198 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 TADA2BQ86TJ2 420 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 THNSL1Q8IYQ7 743 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 RBM46Q8TBY0 533 aaKnown RBP5.8□□□□□ -1.48
VPS13C-204ENST00000395898 ABCB6Q9NP58 842 aa5.8□□□□□ -1.48
VPS13C-204ENST00000395898 UBN2Q6ZU65 1347 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 FAM187AA6NFU0 413 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 EIF3DO15371 548 aaKnown RBP eCLIP5.79□□□□□ -1.485e-6■□□□□ 8.9
VPS13C-204ENST00000395898 CREB3O43889 395 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 RTN2O75298 545 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 PRAMEP78395 509 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 CAPRIN1Q14444 709 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 LLGL1Q15334 1064 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 TRIP13Q15645 432 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 MFSD14CQ5VZR4 134 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 TRIML2Q8N7C3 387 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 AFG1LQ8WV93 481 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 ZNF560Q96MR9 790 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 ACAD9Q9H845 621 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 JPH1Q9HDC5 661 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 FNDC3AQ9Y2H6 1198 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 TNS3Q68CZ2 1445 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 ANP32DO95626 131 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 FTLP02792 175 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 CDC27P30260 824 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 AARSP49588 968 aaKnown RBP eCLIP5.79□□□□□ -1.482e-7■■■■□ 26.2
VPS13C-204ENST00000395898 ROR1Q01973 937 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 GFPT1Q06210 699 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 AP1ARQ63HQ0 302 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 SCN4BQ8IWT1 228 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 PDCD6IPQ8WUM4 868 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 RAVER2Q9HCJ3 691 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 NEMP1O14524 444 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 CCDC22O60826 627 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 SEC31AO94979 1220 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 EEF1DP29692 281 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 PASD1Q8IV76 773 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 ATP11CQ8NB49 1132 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 AGO2Q9UKV8 859 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 POLIQ9UNA4 740 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 PSMD3O43242 534 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 ORC4O43929 436 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 IGKV5-2P06315 115 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 ATP1A3P13637 1013 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 GPSM2P81274 684 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 TRIM28Q13263 835 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 SLFNL1Q499Z3 407 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 RAB42Q8N4Z0 105 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 ASPSCR1Q9BZE9 553 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 GABBR1Q9UBS5 961 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 FRMPD1Q5SYB0 1578 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 TARSL2A2RTX5 802 aaKnown RBP5.79□□□□□ -1.48
VPS13C-204ENST00000395898 GMNCA6NCL1 334 aa5.79□□□□□ -1.48
VPS13C-204ENST00000395898 SCP2P22307 547 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms