RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TMEM110-MUSTN1A8MSY1 372 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 TISP43B9A030 160 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 G3V3G9 751 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 GH2P01242 217 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 MMEP08473 750 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 PEX5P50542 639 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 RBM5P52756 815 aaKnown RBP eCLIP13.71□□□□□ -0.22
SHMT1-205ENST00000395684 SF3A3Q12874 501 aaKnown RBP eCLIP13.71□□□□□ -0.223e-6■■■■■ 29.6
SHMT1-205ENST00000395684 RRP1BQ14684 758 aaKnown RBP13.71□□□□□ -0.22
SHMT1-205ENST00000395684 DCAF8Q5TAQ9 597 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 ZNF746Q6NUN9 644 aaPredicted RBP13.71□□□□□ -0.22
SHMT1-205ENST00000395684 UHMK1Q8TAS1 419 aaKnown RBP13.71□□□□□ -0.22
SHMT1-205ENST00000395684 SELENOSQ9BQE4 189 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 STRA6Q9BX79 667 aa13.71□□□□□ -0.22
SHMT1-205ENST00000395684 GOLGB1Q14789 3259 aaKnown RBP13.71□□□□□ -0.22
SHMT1-205ENST00000395684 UBE4BO95155 1302 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 TCRBV7S2A1N4TA0A589 114 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC169A6NNP5 214 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 CTNNA2P26232 953 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 CHRNA3P32297 505 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 PRELPP51888 382 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 C11orf63Q6NUN7 778 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 FAM228AQ86W67 206 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 SLC9A9Q8IVB4 645 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 DAW1Q8N136 415 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 HVCN1Q96D96 273 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 NACC1Q96RE7 527 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 ZSWIM1Q9BR11 485 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 MTFR1LQ9H019 292 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHMT1-205ENST00000395684 PCYOX1Q9UHG3 505 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 EMSYQ7Z589 1322 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 SYNGAP1Q96PV0 1343 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 GAS7O60861 476 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 COMTP21964 271 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 CDR1P51861 262 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 PPP3CAQ08209 521 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC137Q6PK04 289 aaKnown RBP13.7□□□□□ -0.22
SHMT1-205ENST00000395684 CPNE8Q86YQ8 564 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 FMNL3Q8IVF7 1028 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 RPUSD2Q8IZ73 545 aaKnown RBP13.7□□□□□ -0.22
SHMT1-205ENST00000395684 SYCP3Q8IZU3 236 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 PCDHB18PQ96TA0 734 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 KDM4CQ9H3R0 1056 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 PCIF1Q9H4Z3 704 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 RASAL2Q9UJF2 1139 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 ODF2LQ9ULJ1 636 aa13.7□□□□□ -0.22
SHMT1-205ENST00000395684 MIF4GDA9UHW6 222 aaKnown RBP13.69□□□□□ -0.22
SHMT1-205ENST00000395684 ANKRD63C9JTQ0 380 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 RGS16O15492 202 aaPredicted RBP13.69□□□□□ -0.22
SHMT1-205ENST00000395684 ARP10275 920 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 PYGMP11217 842 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 BCRP11274 1271 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 FGFR4P22455 802 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 GPC5P78333 572 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 MESDQ14696 234 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 CLUL1Q15846 466 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 STXBP4Q6ZWJ1 553 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 PARP9Q8IXQ6 854 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 UBL4BQ8N7F7 174 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 GPATCH11Q8N954 259 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 EPS8L3Q8TE67 593 aaKnown RBP13.69□□□□□ -0.22
SHMT1-205ENST00000395684 KAT5Q92993 513 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 SGSM3Q96HU1 749 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 MYCBPQ99417 103 aaPredicted RBP13.69□□□□□ -0.22
SHMT1-205ENST00000395684 UNC45AQ9H3U1 944 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 ACP6Q9NPH0 428 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 CNOT7Q9UIV1 285 aaKnown RBP13.69□□□□□ -0.22
SHMT1-205ENST00000395684 USP21Q9UK80 565 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 ATMINO43313 823 aaPredicted RBP13.69□□□□□ -0.22
SHMT1-205ENST00000395684 HIP1RO75146 1068 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 TRIM37O94972 964 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 MAP2K2P36507 400 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 SLCO1A2P46721 670 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 XRCC4Q13426 336 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 TCEAL1Q15170 157 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 MAEAQ7L5Y9 396 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 TRPC6Q9Y210 931 aa13.69□□□□□ -0.22
SHMT1-205ENST00000395684 CCT8L1PA6NM43 557 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 PODXLO00592 558 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 PPIP5K2O43314 1243 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 RFX1P22670 979 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 ECE1P42892 770 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 GCLMP48507 274 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 CEP55Q53EZ4 464 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 C1orf220Q5T0J3 134 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 PIGWQ7Z7B1 504 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 LRRC34Q8IZ02 419 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 CCDC197Q8NCU1 140 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 ZSWIM2Q8NEG5 633 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 PRMT1Q99873 361 aaKnown RBP13.68□□□□□ -0.22
SHMT1-205ENST00000395684 LXNQ9BS40 222 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.68□□□□□ -0.22
SHMT1-205ENST00000395684 RIPK2O43353 540 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 SGPL1O95470 568 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 GHRP10912 638 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 ALAS1P13196 640 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 HSPA6P17066 643 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 CHRNB2P17787 502 aa13.68□□□□□ -0.22
SHMT1-205ENST00000395684 KCNJ1P48048 391 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms