RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 OTOP3Q7RTS5 596 aa17.24■□□□□ 0.35
CHMP3-202ENST00000393773 MRPL10Q7Z7H8 261 aaKnown RBP17.24■□□□□ 0.35
CHMP3-202ENST00000393773 URGCPQ8TCY9 931 aa17.24■□□□□ 0.35
CHMP3-202ENST00000393773 ACSF2Q96CM8 615 aaPredicted RBP17.24■□□□□ 0.35
CHMP3-202ENST00000393773 RSAD1Q9HA92 442 aa17.24■□□□□ 0.35
CHMP3-202ENST00000393773 STK39Q9UEW8 545 aa17.24■□□□□ 0.35
CHMP3-202ENST00000393773 PCDHA4Q9UN74 947 aa17.24■□□□□ 0.35
CHMP3-202ENST00000393773 PCDHB2Q9Y5E7 798 aa17.24■□□□□ 0.35
CHMP3-202ENST00000393773 COL4A3BPQ9Y5P4 624 aa17.24■□□□□ 0.35
CHMP3-202ENST00000393773 DNAH14Q0VDD8 3507 aa17.24■□□□□ 0.35
CHMP3-202ENST00000393773 CNTNAP2Q9UHC6 1331 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 DOCK6Q96HP0 2047 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 EML1O00423 815 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 PI15O43692 258 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 SLC37A4O43826 429 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 SSBP05455 408 aaKnown RBP eCLIP17.23■□□□□ 0.35
CHMP3-202ENST00000393773 PDIA3P30101 505 aaKnown RBP17.23■□□□□ 0.35
CHMP3-202ENST00000393773 LETM2Q2VYF4 491 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 CCDC105Q8IYK2 499 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 RNF168Q8IYW5 571 aaPredicted RBP17.23■□□□□ 0.35
CHMP3-202ENST00000393773 DAGLBQ8NCG7 672 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 FLCNQ8NFG4 579 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 NKD2Q969F2 451 aaPredicted RBP17.23■□□□□ 0.35
CHMP3-202ENST00000393773 PGBD4Q96DM1 585 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 TMEM175Q9BSA9 504 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 EMILIN2Q9BXX0 1053 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 C22orf23Q9BZE7 217 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 MINDY3Q9H8M7 445 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 MARCH5Q9NX47 278 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 VAV3Q9UKW4 847 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 PATJQ8NI35 1801 aa17.23■□□□□ 0.35
CHMP3-202ENST00000393773 DDX11L8A8MPP1 907 aa17.22■□□□□ 0.35
CHMP3-202ENST00000393773 EFEMP2O95967 443 aa17.22■□□□□ 0.35
CHMP3-202ENST00000393773 KLRC2P26717 231 aa17.22■□□□□ 0.35
CHMP3-202ENST00000393773 PSMC5P62195 406 aa17.22■□□□□ 0.35
CHMP3-202ENST00000393773 CCT2P78371 535 aaKnown RBP17.22■□□□□ 0.35
CHMP3-202ENST00000393773 FOXK2Q01167 660 aa17.22■□□□□ 0.35
CHMP3-202ENST00000393773 ZNF579Q8NAF0 562 aaKnown RBP17.22■□□□□ 0.35
CHMP3-202ENST00000393773 CMASQ8NFW8 434 aaPredicted RBP17.22■□□□□ 0.35
CHMP3-202ENST00000393773 JPH2Q9BR39 696 aaPredicted RBP17.22■□□□□ 0.35
CHMP3-202ENST00000393773 HERC2P3Q9BVR0 1158 aa17.22■□□□□ 0.35
CHMP3-202ENST00000393773 KCNK12Q9HB15 430 aa17.22■□□□□ 0.35
CHMP3-202ENST00000393773 MAN1C1Q9NR34 630 aa17.22■□□□□ 0.35
CHMP3-202ENST00000393773 WRAP73Q9P2S5 460 aaPredicted RBP17.22■□□□□ 0.35
CHMP3-202ENST00000393773 EP300Q09472 2414 aaPredicted RBP17.21■□□□□ 0.35
CHMP3-202ENST00000393773 NRP1O14786 923 aa17.21■□□□□ 0.35
CHMP3-202ENST00000393773 NARSO43776 548 aaKnown RBP17.21■□□□□ 0.35
CHMP3-202ENST00000393773 SOD2P04179 222 aa17.21■□□□□ 0.35
CHMP3-202ENST00000393773 HOXA11P31270 313 aaPredicted RBP17.21■□□□□ 0.35
CHMP3-202ENST00000393773 NPEPPSP55786 919 aa17.21■□□□□ 0.35
CHMP3-202ENST00000393773 PPP2R5CQ13362 524 aa17.21■□□□□ 0.35
CHMP3-202ENST00000393773 TOB2Q14106 344 aaPredicted RBP17.21■□□□□ 0.35
CHMP3-202ENST00000393773 BLIDQ8IZY5 108 aa17.21■□□□□ 0.35
CHMP3-202ENST00000393773 DHX33Q9H6R0 707 aaKnown RBP17.21■□□□□ 0.35
CHMP3-202ENST00000393773 MRPL17Q9NRX2 175 aaKnown RBP17.21■□□□□ 0.35
CHMP3-202ENST00000393773 VWA8A3KMH1 1905 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 SPDYE4A6NLX3 237 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 INPPL1O15357 1258 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 POMCP01189 267 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 URODP06132 367 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 NCLP19338 710 aaKnown RBP17.2■□□□□ 0.34
CHMP3-202ENST00000393773 ANGPT1Q15389 498 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 CENPQQ7L2Z9 268 aaPredicted RBP17.2■□□□□ 0.34
CHMP3-202ENST00000393773 SRGAP1Q7Z6B7 1085 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 SIX5Q8N196 739 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 SMG8Q8ND04 991 aaKnown RBP17.2■□□□□ 0.34
CHMP3-202ENST00000393773 SLC7A3Q8WY07 619 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 AIFM3Q96NN9 605 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 RPS6KC1Q96S38 1066 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 RHOBTB2Q9BYZ6 727 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 KCNMB3Q9NPA1 279 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 IGSF9Q9P2J2 1179 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 DDX25Q9UHL0 483 aaKnown RBP17.2■□□□□ 0.34
CHMP3-202ENST00000393773 FAN1Q9Y2M0 1017 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 CLUHO75153 1309 aa17.2■□□□□ 0.34
CHMP3-202ENST00000393773 OTOGLQ3ZCN5 2332 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 C2CD2LO14523 706 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 TEX28O15482 410 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 PAPLNO95428 1278 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 QARSP47897 775 aaKnown RBP17.19■□□□□ 0.34
CHMP3-202ENST00000393773 DSC1Q08554 894 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 LAMTOR4Q0VGL1 99 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 NONOQ15233 471 aaKnown RBP eCLIP17.19■□□□□ 0.342e-8■□□□□ 11
CHMP3-202ENST00000393773 INF2Q27J81 1249 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 TAS1R1Q7RTX1 841 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 COLGALT2Q8IYK4 626 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 TRIM22Q8IYM9 498 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 ADSSL1Q8N142 457 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 DTWD2Q8NBA8 298 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 PRPF31Q8WWY3 499 aaKnown RBP17.19■□□□□ 0.34
CHMP3-202ENST00000393773 PSPC1Q8WXF1 523 aaKnown RBP17.19■□□□□ 0.34
CHMP3-202ENST00000393773 TMEM143Q96AN5 459 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 RTP3Q9BQQ7 232 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 BMP2KQ9NSY1 1161 aaPredicted RBP17.19■□□□□ 0.34
CHMP3-202ENST00000393773 KANSL3Q9P2N6 904 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 FBXL21Q9UKT6 434 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 PRG3Q9Y2Y8 225 aaPredicted RBP17.19■□□□□ 0.34
CHMP3-202ENST00000393773 PPME1Q9Y570 386 aa17.19■□□□□ 0.34
CHMP3-202ENST00000393773 COL4A3Q01955 1670 aa17.18■□□□□ 0.34
CHMP3-202ENST00000393773 F8W810 466 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms