RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 MCM6Q14566 821 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 STK38Q15208 465 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 C1orf186Q6ZWK4 172 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 IFNLR1Q8IU57 520 aaPredicted RBP8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 ZBTB8OSQ8IWT0 167 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 ABI1Q8IZP0 508 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 KLHL23Q8NBE8 558 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 SMG8Q8ND04 991 aaKnown RBP8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 SLC17A8Q8NDX2 589 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 DEPTORQ8TB45 409 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 SYMPKQ92797 1274 aaKnown RBP8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 AK8Q96MA6 479 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 SAMD11Q96NU1 681 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 NFKBIZQ9BYH8 718 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 PANK2Q9BZ23 570 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 TMEM117Q9H0C3 514 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 CCDC113Q9H0I3 377 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 NXF3Q9H4D5 531 aaKnown RBP8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 CWH43Q9H720 699 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 BLOC1S4Q9NUP1 217 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 IPPQ9Y573 584 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 STK24Q9Y6E0 443 aa8.48□□□□□ -1.05
HMGB3P1-201ENST00000393368 TTC3P53804 2025 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 A0A087X0B3 334 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 NT5C1B-RDH14C9J2C7 533 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 C5orf67F2Z3F1 127 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 SLC16A4O15374 487 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 POMCP01189 267 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 ITGB1P05556 798 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 PRKCBP05771 671 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 AKAP5P24588 427 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 IRS1P35568 1242 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 NAMPTP43490 491 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 NPTX2P47972 431 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 NASPP49321 788 aaPredicted RBP8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 TFF2Q03403 129 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 DNM1Q05193 864 aaKnown RBP8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 POU5F1BQ06416 359 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 CAMK1Q14012 370 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 SLC39A14Q15043 492 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 TMEM132AQ24JP5 1023 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 ARSHQ5FYA8 562 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 EEF1DP3Q658K8 133 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 NOTUMQ6P988 496 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 AGMOQ6ZNB7 445 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 GPBP1Q86WP2 473 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 LRRC43Q8N309 656 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 SYT2Q8N9I0 419 aaPredicted RBP8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 COLGALT1Q8NBJ5 622 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 LINC00301Q8NCQ3 95 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 RAD54LQ92698 747 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 KIFAP3Q92845 792 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 CALML4Q96GE6 196 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 IFT74Q96LB3 600 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 ZFP42Q96MM3 310 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 PHF12Q96QT6 1004 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 REEP2Q9BRK0 252 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 C11orf84Q9BUA3 381 aaPredicted RBP8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 TRAIPQ9BWF2 469 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 NT5C3AQ9H0P0 336 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 GBP3Q9H0R5 595 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 FZD8Q9H461 694 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 PDZD7Q9H5P4 517 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 TBC1D13Q9NVG8 400 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 PLAGL2Q9UPG8 496 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 ZDHHC9Q9Y397 364 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 SRPRBQ9Y5M8 271 aaKnown RBP8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 CNTNAP2Q9UHC6 1331 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 KIAA1671Q9BY89 1806 aa8.47□□□□□ -1.05
HMGB3P1-201ENST00000393368 SPTLC2O15270 562 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 HOXA2O43364 376 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 ZNF623O75123 536 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 ZC3H11AO75152 810 aaKnown RBP eCLIP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 OFD1O75665 1012 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 EOMESO95936 686 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 ITGA4P13612 1032 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 NCLP19338 710 aaKnown RBP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 POU3F3P20264 500 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 GUCY2CP25092 1073 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 GTF2F1P35269 517 aaKnown RBP eCLIP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 MLH1P40692 756 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 VASPP50552 380 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 RAB27AP51159 221 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 DMP1Q13316 513 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 PRPF4BQ13523 1007 aaKnown RBP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 PPP2R5AQ15172 486 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 MAPK6Q16659 721 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 TCEAL5Q5H9L2 206 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 NOMO2Q5JPE7 1267 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 NT5DC1Q5TFE4 455 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 GLB1LQ6UWU2 654 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 TAS1R3Q7RTX0 852 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 MRPL10Q7Z7H8 261 aaKnown RBP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 TMEM173Q86WV6 379 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 ZNF280BQ86YH2 543 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 THNSL1Q8IYQ7 743 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 PDILTQ8N807 584 aa8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 KRI1Q8N9T8 703 aaKnown RBP8.46□□□□□ -1.06
HMGB3P1-201ENST00000393368 SPPL3Q8TCT6 385 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms