RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 CAVIN2O95810 425 aa8.79□□□□□ -1
LIMS1-203ENST00000393310 CWC27Q6UX04 472 aaKnown RBP8.79□□□□□ -1
LIMS1-203ENST00000393310 PHC3Q8NDX5 983 aa8.79□□□□□ -1
LIMS1-203ENST00000393310 RDM1Q8NG50 284 aa8.79□□□□□ -1
LIMS1-203ENST00000393310 PPTC7Q8NI37 304 aa8.79□□□□□ -1
LIMS1-203ENST00000393310 MYL10Q9BUA6 226 aa8.79□□□□□ -1
LIMS1-203ENST00000393310 FBXO28Q9NVF7 368 aa8.79□□□□□ -1
LIMS1-203ENST00000393310 ZNF263O14978 683 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 NEK2P51955 445 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 SKOR1P84550 965 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 TEAD4Q15561 434 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 ZNF792Q3KQV3 632 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 SGO2Q562F6 1265 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 XKR9Q5GH70 373 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 TADA2BQ86TJ2 420 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 SNX32Q86XE0 403 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 SLFN12Q8IYM2 578 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 JAKMIP2Q96AA8 810 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 GAD1Q99259 594 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 PLEKHA4Q9H4M7 779 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.78□□□□□ -14e-7■■□□□ 13.5
LIMS1-203ENST00000393310 HDAC6Q9UBN7 1215 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 MACROD2A1Z1Q3 448 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 MYO1CO00159 1063 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 ORC4O43929 436 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 P4HBP07237 508 aaKnown RBP8.78□□□□□ -1
LIMS1-203ENST00000393310 CD53P19397 219 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 U2AF2P26368 475 aaKnown RBP eCLIP8.78□□□□□ -1
LIMS1-203ENST00000393310 SLC16A2P36021 539 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 SNX16P57768 344 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 PSMC6P62333 389 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 ZBTB41Q5SVQ8 909 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 C9orf50Q5SZB4 431 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 NUSAP1Q9BXS6 441 aaKnown RBP8.78□□□□□ -1
LIMS1-203ENST00000393310 CHST12Q9NRB3 414 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 LSM7Q9UK45 103 aaKnown RBP8.78□□□□□ -1
LIMS1-203ENST00000393310 NEMFO60524 1076 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 PHACTR2O75167 634 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 CCDC159P0C7I6 412 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 VDRP11473 427 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 NFKBIAP25963 317 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 AXLP30530 894 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 NNMTP40261 264 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 CCR3P51677 355 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 MYL7Q01449 175 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 TDGQ13569 410 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 ZNF852Q6ZMS4 543 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 PDZD4Q76G19 769 aaPredicted RBP8.78□□□□□ -1
LIMS1-203ENST00000393310 UBXN4Q92575 508 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 SELENOSQ9BQE4 189 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 RPF1Q9H9Y2 349 aaKnown RBP8.78□□□□□ -1
LIMS1-203ENST00000393310 CNTNAP2Q9UHC6 1331 aa8.78□□□□□ -1
LIMS1-203ENST00000393310 METAP2P50579 478 aaKnown RBP eCLIP8.77□□□□□ -16e-8■■■■■ 30.3
LIMS1-203ENST00000393310 PTH1RQ03431 593 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 ADCY2Q08462 1091 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 TCEAL5Q5H9L2 206 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 POTEDQ86YR6 584 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 HDAC7Q8WUI4 952 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 RNF34Q969K3 372 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 TMEM165Q9HC07 324 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 MRGBPQ9NV56 204 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 FBXL5Q9UKA1 691 aa8.77□□□□□ -1
LIMS1-203ENST00000393310 A6NJR5 290 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 RRP8O43159 456 aaKnown RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 SORBS3O60504 671 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 GRIK4Q16099 956 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 SYCP3Q8IZU3 236 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 NEK9Q8TD19 979 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 POF1BQ8WVV4 589 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 TSG101Q99816 390 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 OXCT2Q9BYC2 517 aaPredicted RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 COBLO75128 1261 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 RAD51AP2Q09MP3 1159 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 KBTBD12Q3ZCT8 623 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 CCDC50Q8IVM0 306 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 PEX5LQ8IYB4 626 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 DCP1BQ8IZD4 617 aaKnown RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 RGL4Q8IZJ4 473 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 ATP11CQ8NB49 1132 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 ADAM2Q99965 735 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 DDX4Q9NQI0 724 aaKnown RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 ZMYM2Q9UBW7 1377 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 N4BP3O15049 544 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 BMP15O95972 392 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 TRIM27P14373 513 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 GCFC2P16383 781 aaKnown RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 CNR2P34972 360 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 ARPC4P59998 168 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 TRIM32Q13049 653 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 USP39Q53GS9 565 aaKnown RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 DGKKQ5KSL6 1271 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 SRBD1Q8N5C6 995 aaKnown RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 MCPH1Q8NEM0 835 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 CELF4Q9BZC1 486 aaKnown RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 TBX21Q9UL17 535 aa8.77□□□□□ -1.01
LIMS1-203ENST00000393310 APOBEC2Q9Y235 224 aaKnown RBP8.77□□□□□ -1.01
LIMS1-203ENST00000393310 COL2A1P02458 1487 aaPredicted RBP8.76□□□□□ -1.01
LIMS1-203ENST00000393310 ADGRA3Q8IWK6 1321 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms