RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 BRDTQ58F21 947 aaPredicted RBP25.08■■□□□ 1.61
VPS16-201ENST00000380443 PRRT2Q7Z6L0 340 aaPredicted RBP25.08■■□□□ 1.61
VPS16-201ENST00000380443 MPHOSPH6Q99547 160 aaKnown RBP25.08■■□□□ 1.61
VPS16-201ENST00000380443 MAFBQ9Y5Q3 323 aaPredicted RBP25.08■■□□□ 1.61
VPS16-201ENST00000380443 PTPRFP10586 1907 aa25.08■■□□□ 1.61
VPS16-201ENST00000380443 DDX3XO00571 662 aaKnown RBP eCLIP25.07■■□□□ 1.6
VPS16-201ENST00000380443 IRF6O14896 467 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 KIAA0391O15091 583 aaKnown RBP25.07■■□□□ 1.6
VPS16-201ENST00000380443 NF2P35240 595 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 ALDH5A1P51649 535 aaPredicted RBP25.07■■□□□ 1.6
VPS16-201ENST00000380443 VSNL1P62760 191 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 ERO1BQ86YB8 467 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 CCDC60Q8IWA6 550 aaPredicted RBP25.07■■□□□ 1.6
VPS16-201ENST00000380443 FBXL18Q96ME1 805 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 SYT11Q9BT88 431 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 L1RE1Q9UN81 338 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 ARID2Q68CP9 1835 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 TGFB3P10600 412 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 EDNRBP24530 442 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 PLA2G4AP47712 749 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 GLE1Q53GS7 698 aaKnown RBP25.07■■□□□ 1.6
VPS16-201ENST00000380443 TREML2Q5T2D2 321 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 NFRKBQ6P4R8 1299 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 SYCE1Q8N0S2 351 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 SPATA4Q8NEY3 305 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 COG1Q8WTW3 980 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 PACSIN1Q9BY11 444 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 GPR88Q9GZN0 384 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 SEPT9Q9UHD8 586 aaPredicted RBP25.07■■□□□ 1.6
VPS16-201ENST00000380443 PPME1Q9Y570 386 aa25.07■■□□□ 1.6
VPS16-201ENST00000380443 SLC25A27O95847 323 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 MXI1P50539 228 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 GPS2Q13227 327 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 SNRNP35Q16560 246 aaKnown RBP25.06■■□□□ 1.6
VPS16-201ENST00000380443 ANKRD13AQ8IZ07 590 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 SH2D3AQ9BRG2 576 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 UBXN6Q9BZV1 441 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 SPATC1LQ9H0A9 340 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 KIAA1586Q9HCI6 787 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 ABCB6Q9NP58 842 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 ZNF302Q9NR11 478 aa25.06■■□□□ 1.6
VPS16-201ENST00000380443 PPP3CAQ08209 521 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 C1orf220Q5T0J3 134 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 PHLDB3Q6NSJ2 640 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 TAF4BQ92750 862 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 MFSD14AQ96MC6 490 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 COQ4Q9Y3A0 265 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 PASKQ96RG2 1323 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 LCTP09848 1927 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 IGKV6D-21A0A0A0MT36 114 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 DLG4P78352 724 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 IRX3P78415 501 aaPredicted RBP25.05■■□□□ 1.6
VPS16-201ENST00000380443 NEDD9Q14511 834 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 PBKQ96KB5 322 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 FAM81BQ96LP2 452 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 NIFKQ9BYG3 293 aaKnown RBP25.05■■□□□ 1.6
VPS16-201ENST00000380443 XPNPEP1Q9NQW7 623 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 BTBD7Q9P203 1132 aa25.05■■□□□ 1.6
VPS16-201ENST00000380443 TISP43B9A030 160 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 SASH3O75995 380 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 TMEM253P0C7T8 217 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 HSPA6P17066 643 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 TNFAIP3P21580 790 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 ADSSP30520 456 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 KRT39Q6A163 491 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 GADL1Q6ZQY3 521 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 U2AF1L4Q8WU68 220 aaKnown RBP25.04■■□□□ 1.6
VPS16-201ENST00000380443 ACBD3Q9H3P7 528 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 TMEM8AQ9HCN3 771 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 ARHGAP28Q9P2N2 729 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 SYNGAP1Q96PV0 1343 aa25.04■■□□□ 1.6
VPS16-201ENST00000380443 SPDYE5A6NIY4 337 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 ANKRD63C9JTQ0 380 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 OATP04181 439 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 GCLMP48507 274 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 RPS6KA1Q15418 735 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 KCNV1Q6PIU1 500 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 PARD3BQ8TEW8 1205 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 BSNDQ8WZ55 320 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 TMEM117Q9H0C3 514 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 UBE2TQ9NPD8 197 aaPredicted RBP25.03■■□□□ 1.6
VPS16-201ENST00000380443 KCNH4Q9UQ05 1017 aa25.03■■□□□ 1.6
VPS16-201ENST00000380443 NCK2O43639 380 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 RFC5P40937 340 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 NOP2P46087 812 aaKnown RBP25.02■■□□□ 1.6
VPS16-201ENST00000380443 APLP1P51693 650 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 CNTN2Q02246 1040 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 CYFIP1Q7L576 1253 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 SLFN11Q7Z7L1 901 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 LRRC57Q8N9N7 239 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 TPCN2Q8NHX9 752 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 LNX1Q8TBB1 728 aaPredicted RBP25.02■■□□□ 1.6
VPS16-201ENST00000380443 POLR3FQ9H1D9 316 aaPredicted RBP25.02■■□□□ 1.6
VPS16-201ENST00000380443 NRBP2Q9NSY0 501 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 NCANO14594 1321 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 ADM5C9JUS6 153 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 ADRB2P07550 413 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 POLGP54098 1239 aaPredicted RBP25.02■■□□□ 1.6
VPS16-201ENST00000380443 SP2Q02086 613 aa25.02■■□□□ 1.6
VPS16-201ENST00000380443 FAM160B1Q5W0V3 765 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms