RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 GIT2Q14161 759 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 PCBP1Q15365 356 aaKnown RBP eCLIP14.75□□□□□ -0.05
VPS28-202ENST00000377348 TPRNQ4KMQ1 711 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 PPP4R3CPQ6ZMV5 832 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 CCDC73Q6ZRK6 1079 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 ZNF598Q86UK7 904 aaKnown RBP14.75□□□□□ -0.05
VPS28-202ENST00000377348 FIBCD1Q8N539 461 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 TGS1Q96RS0 853 aaKnown RBP14.75□□□□□ -0.05
VPS28-202ENST00000377348 TRAIPQ9BWF2 469 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 EIF2AQ9BY44 585 aaKnown RBP14.75□□□□□ -0.05
VPS28-202ENST00000377348 GDPD2Q9HCC8 539 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 KMT5AQ9NQR1 393 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 PRMT7Q9NVM4 692 aaPredicted RBP14.75□□□□□ -0.05
VPS28-202ENST00000377348 HCSTQ9UBK5 93 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 PCDHB2Q9Y5E7 798 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 ATP6V1DQ9Y5K8 247 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 COL6A3P12111 3177 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 MYO9BQ13459 2157 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 MYMKA6NI61 221 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 LINC00271P0C7V0 271 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 AXLP30530 894 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 ERVK-21P61565 698 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 NCBP1Q09161 790 aaKnown RBP14.74□□□□□ -0.05
VPS28-202ENST00000377348 E2F4Q16254 413 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 MAPK6Q16659 721 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 CLLU1OSQ5K130 101 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 RESP18Q5W5W9 173 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 NOTUMQ6P988 496 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 SV2BQ7L1I2 683 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 DYMQ7RTS9 669 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 TAS1R3Q7RTX0 852 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 HELQQ8TDG4 1101 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 STAMQ92783 540 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 DHX58Q96C10 678 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 ZHX3Q9H4I2 956 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 ARHGAP28Q9P2N2 729 aa14.74□□□□□ -0.05
VPS28-202ENST00000377348 MRPL42Q9Y6G3 142 aaKnown RBP14.74□□□□□ -0.05
VPS28-202ENST00000377348 CNTNAP2Q9UHC6 1331 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 ACKR2O00590 384 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 FAM13AO94988 1023 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 NPTXRO95502 500 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 EOMESO95936 686 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 RAB27AP51159 221 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 EFNA5P52803 228 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 PRPF4BQ13523 1007 aaKnown RBP14.73□□□□□ -0.05
VPS28-202ENST00000377348 ADGRE1Q14246 886 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 FAM187BQ17R55 369 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 TMEM132AQ24JP5 1023 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 NT5DC1Q5TFE4 455 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 CMTR2Q8IYT2 770 aaKnown RBP14.73□□□□□ -0.05
VPS28-202ENST00000377348 MYCT1Q8N699 235 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 SMG8Q8ND04 991 aaKnown RBP14.73□□□□□ -0.05
VPS28-202ENST00000377348 DDX12PQ92771 950 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 PRIMPOLQ96LW4 560 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 CASD1Q96PB1 797 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 RNF39Q9H2S5 420 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 PDZD7Q9H5P4 517 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 C17orf75Q9HAS0 396 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 RNF216Q9NWF9 866 aaPredicted RBP14.73□□□□□ -0.05
VPS28-202ENST00000377348 ODF2LQ9ULJ1 636 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 HES2Q9Y543 173 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 IPPQ9Y573 584 aa14.73□□□□□ -0.05
VPS28-202ENST00000377348 PHLPP2Q6ZVD8 1323 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 A0A1B0GUA9 196 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 K7ERI5 159 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 POLR2DO15514 142 aaKnown RBP14.72□□□□□ -0.05
VPS28-202ENST00000377348 ZNF623O75123 536 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 TBCAO75347 108 aaKnown RBP14.72□□□□□ -0.05
VPS28-202ENST00000377348 SKIP12755 728 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 CTNNB1P35222 781 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 ZNF131P52739 623 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 EPC2Q52LR7 807 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 EEF1DP3Q658K8 133 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 AGMOQ6ZNB7 445 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 TMEM192Q8IY95 271 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 TMEM161BQ8NDZ6 487 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 GDPD5Q8WTR4 605 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 SPIRE2Q8WWL2 714 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 CCDC51Q96ER9 411 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 APOL6Q9BWW8 343 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 SCAND2PQ9GZW5 306 aaPredicted RBP14.72□□□□□ -0.05
VPS28-202ENST00000377348 TMEM117Q9H0C3 514 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 NXF3Q9H4D5 531 aaKnown RBP14.72□□□□□ -0.05
VPS28-202ENST00000377348 PARVGQ9HBI0 331 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 TYW1Q9NV66 732 aaKnown RBP14.72□□□□□ -0.05
VPS28-202ENST00000377348 FAM13BQ9NYF5 915 aa14.72□□□□□ -0.05
VPS28-202ENST00000377348 LARSQ9P2J5 1176 aaKnown RBP14.72□□□□□ -0.05
VPS28-202ENST00000377348 A0A1B0GVL5 298 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 HOXA2O43364 376 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 LPXNO60711 386 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 FOSL2P15408 326 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 SMTNP53814 917 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 NCKAP1LP55160 1127 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 ADALQ6DHV7 355 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 SLC27A1Q6PCB7 646 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 LRRC55Q6ZSA7 311 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 MRPL10Q7Z7H8 261 aaKnown RBP14.71□□□□□ -0.05
VPS28-202ENST00000377348 ABI1Q8IZP0 508 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 IQUBQ8NA54 791 aa14.71□□□□□ -0.05
VPS28-202ENST00000377348 FBXO22Q8NEZ5 403 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms