RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 MAGOHP61326 146 aaKnown RBP27.32■■□□□ 1.96
C9orf40-201ENST00000376854 IFFO1Q0D2I5 559 aa27.32■■□□□ 1.96
C9orf40-201ENST00000376854 MIER3Q7Z3K6 550 aa27.32■■□□□ 1.96
C9orf40-201ENST00000376854 YTHDF3Q7Z739 585 aaKnown RBP27.32■■□□□ 1.96
C9orf40-201ENST00000376854 MAGOHBQ96A72 148 aaKnown RBP27.32■■□□□ 1.96
C9orf40-201ENST00000376854 GMNCA6NCL1 334 aa27.32■■□□□ 1.96
C9orf40-201ENST00000376854 ITGB5P18084 799 aa27.32■■□□□ 1.96
C9orf40-201ENST00000376854 DHX34Q14147 1143 aaKnown RBP27.32■■□□□ 1.96
C9orf40-201ENST00000376854 C11orf63Q6NUN7 778 aa27.32■■□□□ 1.96
C9orf40-201ENST00000376854 MIGA2Q7L4E1 593 aa27.32■■□□□ 1.96
C9orf40-201ENST00000376854 CNOT8Q9UFF9 292 aaKnown RBP27.32■■□□□ 1.96
C9orf40-201ENST00000376854 DCDC2CA8MYV0 355 aa27.31■■□□□ 1.96
C9orf40-201ENST00000376854 GCLMP48507 274 aa27.31■■□□□ 1.96
C9orf40-201ENST00000376854 SPDYCQ5MJ68 293 aa27.31■■□□□ 1.96
C9orf40-201ENST00000376854 RPUSD2Q8IZ73 545 aaKnown RBP27.31■■□□□ 1.96
C9orf40-201ENST00000376854 SUPT20HQ8NEM7 779 aa27.31■■□□□ 1.96
C9orf40-201ENST00000376854 CYFIP2Q96F07 1278 aa27.31■■□□□ 1.96
C9orf40-201ENST00000376854 VCPKMTQ9H867 229 aa27.31■■□□□ 1.96
C9orf40-201ENST00000376854 ZDHHC18Q9NUE0 388 aa27.31■■□□□ 1.96
C9orf40-201ENST00000376854 MIF4GDA9UHW6 222 aaKnown RBP27.3■■□□□ 1.96
C9orf40-201ENST00000376854 TRAPPC3O43617 180 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 EIF3BP55884 814 aaKnown RBP27.3■■□□□ 1.96
C9orf40-201ENST00000376854 AADACL2Q6P093 401 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 JAMLQ86YT9 394 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 UBL4BQ8N7F7 174 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 FAM151AQ8WW52 585 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 VTI1AQ96AJ9 217 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 ACCSQ96QU6 501 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 CBWD1Q9BRT8 395 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 GLIS2Q9BZE0 524 aaPredicted RBP27.3■■□□□ 1.96
C9orf40-201ENST00000376854 VEZTQ9HBM0 779 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 LRRC4CQ9HCJ2 640 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 FBXO28Q9NVF7 368 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 GGA2Q9UJY4 613 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 PFASO15067 1338 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 P4HA2O15460 535 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 ALCAMQ13740 583 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 DLGAP5Q15398 846 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 EPC2Q52LR7 807 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 FAM160B2Q86V87 743 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 TMEM39BQ9GZU3 492 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 CAPN7Q9Y6W3 813 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 SYNGAP1Q96PV0 1343 aa27.3■■□□□ 1.96
C9orf40-201ENST00000376854 TMEM110-MUSTN1A8MSY1 372 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 GPC5P78333 572 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 FBXW10Q5XX13 1052 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 KRT35Q92764 455 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 PDGFDQ9GZP0 370 aaPredicted RBP27.29■■□□□ 1.96
C9orf40-201ENST00000376854 RASAL2Q9UJF2 1139 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 P4HBP07237 508 aaKnown RBP27.29■■□□□ 1.96
C9orf40-201ENST00000376854 USP8P40818 1118 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 RNF187Q5TA31 235 aaPredicted RBP27.29■■□□□ 1.96
C9orf40-201ENST00000376854 ZNF746Q6NUN9 644 aaPredicted RBP27.29■■□□□ 1.96
C9orf40-201ENST00000376854 MMS22LQ6ZRQ5 1243 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 PSMD1Q99460 953 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 ZNF277Q9NRM2 450 aaPredicted RBP27.29■■□□□ 1.96
C9orf40-201ENST00000376854 KCNH7Q9NS40 1196 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 COL4A5P29400 1685 aa27.29■■□□□ 1.96
C9orf40-201ENST00000376854 PLA2G6O60733 806 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 MAPTP10636 758 aaKnown RBP27.28■■□□□ 1.96
C9orf40-201ENST00000376854 PLTPP55058 493 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 TCEAL1Q15170 157 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 GRIPAP1Q4V328 841 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 C3orf20Q8ND61 904 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 C18orf8Q96DM3 657 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 GMLQ99445 158 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 ZSWIM1Q9BR11 485 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 SLTMQ9NWH9 1034 aaKnown RBP eCLIP27.28■■□□□ 1.96
C9orf40-201ENST00000376854 SNX24Q9Y343 169 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 ZHX2Q9Y6X8 837 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 PHF2O75151 1096 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 FSBPO95073 299 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 IFT88Q13099 833 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 C1orf220Q5T0J3 134 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 ICE2Q659A1 982 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 XXYLT1Q8NBI6 393 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 HSPBP1Q9NZL4 362 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 FEM1BQ9UK73 627 aa27.28■■□□□ 1.96
C9orf40-201ENST00000376854 KIAA0391O15091 583 aaKnown RBP27.27■■□□□ 1.96
C9orf40-201ENST00000376854 PLS3P13797 630 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 MARCKSL1P49006 195 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 C12orf56Q8IXR9 622 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 TMEM174Q8WUU8 243 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 KAT5Q92993 513 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 RTN2O75298 545 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 PAEPP09466 180 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 HSPA6P17066 643 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 PMS2P54278 862 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 DRG2P55039 364 aaKnown RBP27.27■■□□□ 1.96
C9orf40-201ENST00000376854 TNIP1Q15025 636 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 ZSWIM2Q8NEG5 633 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 TLCD1Q96CP7 247 aa27.27■■□□□ 1.96
C9orf40-201ENST00000376854 CHORDC1Q9UHD1 332 aaPredicted RBP27.27■■□□□ 1.96
C9orf40-201ENST00000376854 MYH11P35749 1972 aa27.26■■□□□ 1.95
C9orf40-201ENST00000376854 SGPL1O95470 568 aa27.26■■□□□ 1.95
C9orf40-201ENST00000376854 CHRNA3P32297 505 aa27.26■■□□□ 1.95
C9orf40-201ENST00000376854 FNTAP49354 379 aa27.26■■□□□ 1.95
C9orf40-201ENST00000376854 RARRES1P49788 294 aa27.26■■□□□ 1.95
C9orf40-201ENST00000376854 HSD17B4P51659 736 aa27.26■■□□□ 1.95
C9orf40-201ENST00000376854 SPDYE2Q495Y8 402 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms