RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 CEP170P1Q96L14 293 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 BLOC1S6Q9UL45 172 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 STAP1Q9ULZ2 295 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 NFU1Q9UMS0 254 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 ABCB11O95342 1321 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 CDHR2Q9BYE9 1310 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 E7ENQ6 273 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 DEAF1O75398 565 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 FGGP02679 453 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 DDIT3P35638 169 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 CDC42EP1Q00587 391 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 AP1B1Q10567 949 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 MORF4L2Q15014 288 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 GRAMD1BQ3KR37 738 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 MSL3Q8N5Y2 521 aaKnown RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 TTC8Q8TAM2 541 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 RNF139Q8WU17 664 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 ROPN1BQ9BZX4 212 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 CARD9Q9H257 536 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 ROPN1Q9HAT0 212 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 GPBP1L1Q9HC44 474 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 TOPORSQ9NS56 1045 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 ABCF3Q9NUQ8 709 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 MPP6Q9NZW5 540 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 NDUFA13Q9P0J0 144 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 FRMPD2Q68DX3 1309 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 CCDC78A2IDD5 438 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 ENC1O14682 589 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 PKP1Q13835 747 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 PFKFB3Q16875 520 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 KBTBD12Q3ZCT8 623 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 ZNF667Q5HYK9 610 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 EFL1Q7Z2Z2 1120 aaKnown RBP9.47□□□□□ -0.89
SYNE1-209ENST00000367257 FRMD5Q7Z6J6 570 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 CCNYQ8ND76 341 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 ICA1LQ8NDH6 482 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 GOLPH3LQ9H4A5 285 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 KCND2Q9NZV8 630 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 DLGAP2Q9P1A6 1054 aa9.47□□□□□ -0.89
SYNE1-209ENST00000367257 RASA4BC9J798 803 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 RASA4O43374 803 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 OCRLQ01968 901 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 ADRM1Q16186 407 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 BBS9Q3SYG4 887 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 OR6B2Q6IFH4 312 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 CYB5D1Q6P9G0 228 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 LRRC47Q8N1G4 583 aaKnown RBP9.46□□□□□ -0.89
SYNE1-209ENST00000367257 XXYLT1Q8NBI6 393 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 FAF2Q96CS3 445 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 SSU72P8A0A1W2PR75 194 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 FTCDO95954 541 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 AARSP49588 968 aaKnown RBP eCLIP9.46□□□□□ -0.89
SYNE1-209ENST00000367257 ARFIP2P53365 341 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 SPOUT1Q5T280 376 aaKnown RBP9.46□□□□□ -0.89
SYNE1-209ENST00000367257 MIGA2Q7L4E1 593 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 RHOT1Q8IXI2 618 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 RFFLQ8WZ73 363 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 ANO3Q9BYT9 981 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 MMADHCQ9H3L0 296 aaPredicted RBP9.46□□□□□ -0.89
SYNE1-209ENST00000367257 DDX28Q9NUL7 540 aaKnown RBP9.46□□□□□ -0.89
SYNE1-209ENST00000367257 WDR35Q9P2L0 1181 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 GINS2Q9Y248 185 aa9.46□□□□□ -0.89
SYNE1-209ENST00000367257 THRAP3Q9Y2W1 955 aaKnown RBP9.46□□□□□ -0.89
SYNE1-209ENST00000367257 USP6P35125 1406 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 ZMYND10O75800 440 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 TSPAN9O75954 239 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 PSMA2P25787 234 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 PMLP29590 882 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 HSPA9P38646 679 aaKnown RBP9.46□□□□□ -0.9
SYNE1-209ENST00000367257 BCAMP50895 628 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 INPP5AQ14642 412 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 ZYXQ15942 572 aaKnown RBP9.46□□□□□ -0.9
SYNE1-209ENST00000367257 SPATA21Q7Z572 469 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 ABI1Q8IZP0 508 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 RAD54LQ92698 747 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 PPP1R14BQ96C90 147 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 OTUB1Q96FW1 271 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-209ENST00000367257 GCNAQ96QF7 691 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 FRMD8P1Q9BZ68 369 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-209ENST00000367257 COA1Q9GZY4 146 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 NOD2Q9HC29 1040 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 ATP11BQ9Y2G3 1177 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 NCF2P19878 526 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-209ENST00000367257 IL10P22301 178 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 RAP1GDS1P52306 607 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 NAA35Q5VZE5 725 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 LONP2Q86WA8 852 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 COG1Q8WTW3 980 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 SDR42E1Q8WUS8 393 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 MAML1Q92585 1016 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 PBXIP1Q96AQ6 731 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 ING2Q9H160 280 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 EPN3Q9H201 632 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 SAYSD1Q9NPB0 183 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 HACD3Q9P035 362 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 PNMA3Q9UL41 463 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 ARL2BPQ9Y2Y0 163 aa9.46□□□□□ -0.9
SYNE1-209ENST00000367257 COPG1Q9Y678 874 aaKnown RBP9.46□□□□□ -0.9
SYNE1-209ENST00000367257 HNRNPCL2B2RXH8 293 aa9.45□□□□□ -0.9
SYNE1-209ENST00000367257 PIK3R2O00459 728 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms