RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HOXA10P31260 410 aaPredicted RBP13.08□□□□□ -0.32
CLIP3-201ENST00000360535 PRELPP51888 382 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 SEL1L2Q5TEA6 688 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 AGBL2Q5U5Z8 902 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 HOOK3Q86VS8 718 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 UBL4BQ8N7F7 174 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 HVCN1Q96D96 273 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLIP3-201ENST00000360535 GPRC5CQ9NQ84 441 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 INTS9Q9NV88 658 aaKnown RBP13.08□□□□□ -0.32
CLIP3-201ENST00000360535 SORBS3O60504 671 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 PYGMP11217 842 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 PPATQ06203 517 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 TTC27Q6P3X3 843 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 STXBP4Q6ZWJ1 553 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 PNMA8AQ86V59 439 aaPredicted RBP13.08□□□□□ -0.32
CLIP3-201ENST00000360535 SAAL1Q96ER3 474 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 CHMP6Q96FZ7 201 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 NAP1L3Q99457 506 aaPredicted RBP13.08□□□□□ -0.32
CLIP3-201ENST00000360535 KCNK9Q9NPC2 374 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 BAIAP2L1Q9UHR4 511 aa13.08□□□□□ -0.32
CLIP3-201ENST00000360535 IGLV3-22A0A075B6J6 115 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 DLATP10515 647 aaKnown RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 MAPK7Q13164 816 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 LONRF1Q17RB8 773 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 BMT2Q1RMZ1 405 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 DAB2IPQ5VWQ8 1189 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 DUPD1Q68J44 220 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 MOXD1Q6UVY6 613 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 PRELID2Q8N945 189 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 MKL1Q969V6 931 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 NACC1Q96RE7 527 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 KIFC3Q9BVG8 833 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 NHSQ6T4R5 1651 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 KIAA0391O15091 583 aaKnown RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 SSR1P43307 286 aaKnown RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 POU5F1Q01860 360 aaKnown RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 CETN1Q12798 172 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 HIBCHQ6NVY1 386 aaPredicted RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 PADI6Q6TGC4 694 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 SLC47A2Q86VL8 602 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 LRRC34Q8IZ02 419 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 ZDHHC14Q8IZN3 488 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 TCP11Q8WWU5 503 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 PRMT6Q96LA8 375 aaPredicted RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 CARD9Q9H257 536 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 TBK1Q9UHD2 729 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 COL24A1Q17RW2 1714 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 CCDC169A6NNP5 214 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 IPO5O00410 1097 aaKnown RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 SLC16A4O15374 487 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 MAP2K2P36507 400 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 VAMP7P51809 220 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 CEP55Q53EZ4 464 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 ANKRD20A8PQ5CZ79 823 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 CCDC91Q7Z6B0 441 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 SEPT12Q8IYM1 358 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 PABPC3Q9H361 631 aaKnown RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 MTRF1LQ9UGC7 380 aaKnown RBP13.07□□□□□ -0.32
CLIP3-201ENST00000360535 INTUQ9ULD6 942 aa13.07□□□□□ -0.32
CLIP3-201ENST00000360535 PSMD10O75832 226 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 CLTAP09496 248 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 SCTRP47872 440 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 GPC5P78333 572 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 SP4Q02446 784 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ZKSCAN8Q15776 578 aaPredicted RBP13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ZFYVE27Q5T4F4 411 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 C6orf89Q6UWU4 347 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 MIER3Q7Z3K6 550 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ATG4AQ8WYN0 398 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ZNF653Q96CK0 615 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ZDHHC15Q96MV8 337 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 PWWP2AQ96N64 755 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 CEP89Q96ST8 783 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 PCDHB18PQ96TA0 734 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 DDX23Q9BUQ8 820 aaKnown RBP13.06□□□□□ -0.32
CLIP3-201ENST00000360535 VEZTQ9HBM0 779 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ASIC3Q9UHC3 531 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 GTPBP10A4D1E9 387 aaKnown RBP13.06□□□□□ -0.32
CLIP3-201ENST00000360535 EIF3DO15371 548 aaKnown RBP eCLIP13.06□□□□□ -0.32
CLIP3-201ENST00000360535 CLDN3O15551 220 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ECE2O60344 883 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 PPFIA2O75334 1257 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 KRT5P13647 590 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 DRD4P21917 467 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 NPEPPSP55786 919 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 PEX3P56589 373 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 AOC3Q16853 763 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 GRIPAP1Q4V328 841 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 CCDC197Q8NCU1 140 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 OLIG1Q8TAK6 271 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 GDAP1Q8TB36 358 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 DHX38Q92620 1227 aaKnown RBP13.06□□□□□ -0.32
CLIP3-201ENST00000360535 TATDN2Q93075 761 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 NUP85Q9BW27 656 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 ZDHHC18Q9NUE0 388 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 NENFQ9UMX5 172 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 SUGT1Q9Y2Z0 365 aa13.06□□□□□ -0.32
CLIP3-201ENST00000360535 CREB1P16220 341 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms