RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 CYBBP04839 570 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 PRKCBP05771 671 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 RESP18Q5W5W9 173 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 BHMTQ93088 406 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 IQANK1A0A1B0GTG1 560 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 ZNF70Q9UC06 446 aaPredicted RBP16.59■□□□□ 0.25
PTPRF-201ENST00000359947 CALB1P05937 261 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 ACOT2P49753 483 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 ARHGDIAP52565 204 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 ZNF235Q14590 738 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 LZICQ8WZA0 190 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 ANLNQ9NQW6 1124 aa16.59■□□□□ 0.25
PTPRF-201ENST00000359947 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.59■□□□□ 0.25
PTPRF-201ENST00000359947 CDK12Q9NYV4 1490 aaPredicted RBP16.59■□□□□ 0.25
PTPRF-201ENST00000359947 PRAMEP78395 509 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 H3BRJ5 948 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 RBBP7Q16576 425 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 DUOXA2Q1HG44 320 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 GLE1Q53GS7 698 aaKnown RBP16.58■□□□□ 0.25
PTPRF-201ENST00000359947 GNASQ5JWF2 1037 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 TRIM59Q8IWR1 403 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 GPD1LQ8N335 351 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 RAPGEF5Q92565 580 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 MYOZ2Q9NPC6 264 aa16.58■□□□□ 0.25
PTPRF-201ENST00000359947 GSG1L2A8MUP6 293 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 PPFIA2O75334 1257 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 LIG3P49916 1009 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 ZNF211Q13398 564 aaPredicted RBP16.58■□□□□ 0.24
PTPRF-201ENST00000359947 STRIP1Q5VSL9 837 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 HIPK4Q8NE63 616 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 CCDC138Q96M89 665 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 CCT5P48643 541 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 ENOX1Q8TC92 643 aaKnown RBP16.58■□□□□ 0.24
PTPRF-201ENST00000359947 ZMYND12Q9H0C1 365 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 RPS6KA5O75582 802 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 HEATR6Q6AI08 1181 aaKnown RBP16.58■□□□□ 0.24
PTPRF-201ENST00000359947 PCDHB7Q9Y5E2 793 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 CTNND1O60716 968 aaKnown RBP16.58■□□□□ 0.24
PTPRF-201ENST00000359947 CA4P22748 312 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 HDLBPQ00341 1268 aaKnown RBP16.58■□□□□ 0.24
PTPRF-201ENST00000359947 RAD51Q06609 339 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 DPF3Q92784 378 aa16.58■□□□□ 0.24
PTPRF-201ENST00000359947 PLEKHG2Q9H7P9 1386 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 RASGRF2O14827 1237 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 RGS7P49802 495 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 ST8SIA6P61647 398 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 GPC5P78333 572 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 ZSCAN26Q16670 478 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 WDR48Q8TAF3 677 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 ZNF512Q96ME7 567 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-201ENST00000359947 ZBTB18Q99592 522 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 FAM95CA0A1B0GW59 222 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 TRAPPC3O43617 180 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 NOVA2Q9UNW9 492 aaKnown RBP16.57■□□□□ 0.24
PTPRF-201ENST00000359947 TBXAS1P24557 533 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-201ENST00000359947 MGAT5BQ3V5L5 792 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 DEFB132Q7Z7B7 95 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 RASSF3Q86WH2 238 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 RHOT2Q8IXI1 618 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 XAB2Q9HCS7 855 aaKnown RBP16.57■□□□□ 0.24
PTPRF-201ENST00000359947 AGAP1Q9UPQ3 857 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 TOB2Q14106 344 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-201ENST00000359947 WDR72Q3MJ13 1102 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 CCDC197Q8NCU1 140 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 SNX9Q9Y5X1 595 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 PRR29P0C7W0 189 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 EPHB4P54760 987 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 DAGLAQ9Y4D2 1042 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 CCNYL1Q8N7R7 359 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 TEX13BQ9BXU2 312 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 FAN1Q9Y2M0 1017 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 EMSYQ7Z589 1322 aa16.57■□□□□ 0.24
PTPRF-201ENST00000359947 PRR23AA6NEV1 266 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 LRRC53A6NM62 1247 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 IER5Q5VY09 327 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 PDCD7Q8N8D1 485 aaKnown RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 APPL2Q8NEU8 664 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 OSBPL5Q9H0X9 879 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 FOXO4P98177 505 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 DRAP1Q14919 205 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ZC3H18Q86VM9 953 aaKnown RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 KATNAL1Q9BW62 490 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 KLHL11Q9NVR0 708 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ARL4DP49703 201 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ZNF564Q8TBZ8 553 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 USH1CQ9Y6N9 552 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 CDHR2Q9BYE9 1310 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 UBE2Q2LH0YL09 131 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ATP9BO43861 1147 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 SULT1E1P49888 294 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 TTC8Q8TAM2 541 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 NMT1P30419 496 aaKnown RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ATG16L1Q676U5 607 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 TDRD7Q8NHU6 1098 aaKnown RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 RBM41Q96IZ5 413 aaKnown RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 ZNF560Q96MR9 790 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 INTS2Q9H0H0 1204 aaKnown RBP16.56■□□□□ 0.24
PTPRF-201ENST00000359947 MUC3BQ9H195 1237 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 CASS4Q9NQ75 786 aa16.56■□□□□ 0.24
PTPRF-201ENST00000359947 SUN2Q9UH99 717 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms