RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TCP11Q8WWU5 503 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 TSG101Q99816 390 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 TMEM39AQ9NV64 488 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 INPP5FQ9Y2H2 1132 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 DNM1LO00429 736 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 IGHA2P01877 340 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 GAP43P17677 238 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 AKAP5P24588 427 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 PHKA2P46019 1235 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 GPC3P51654 580 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 KNOP1Q1ED39 458 aaKnown RBP10.09□□□□□ -0.79
USP4-202ENST00000351842 CPLX3Q8WVH0 158 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 FUCA2Q9BTY2 467 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 NRBP1Q9UHY1 535 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 DACH1Q9UI36 760 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 RPS6KA5O75582 802 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 ACRP10323 421 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 TFDP1Q14186 410 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 MXD4Q14582 209 aaPredicted RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 PPP2R5AQ15172 486 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 CCSAPQ6IQ19 270 aaPredicted RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 DHX40Q8IX18 779 aaKnown RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 MAGEC2Q9UBF1 373 aaPredicted RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 CACNG4Q9UBN1 327 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 Q9Y3F1 56 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 MORC2Q9Y6X9 1032 aaPredicted RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 MOXD2PA6NHM9 499 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 ARVCFO00192 962 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 CLDN3O15551 220 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 NR3C1P04150 777 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 ARL2P36404 184 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 TNFSF9P41273 254 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 LRMPQ12912 555 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 LRRC26Q2I0M4 334 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 RBM43Q6ZSC3 357 aaKnown RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 STXBP4Q6ZWJ1 553 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 FILIP1Q7Z7B0 1213 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 RSPH3Q86UC2 560 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 CBWD2Q8IUF1 395 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 TMEM192Q8IY95 271 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 C7orf61Q8IZ16 206 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 LPPQ93052 612 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 CEP89Q96ST8 783 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 JPH2Q9BR39 696 aaPredicted RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 MSTO1Q9BUK6 570 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 AGO3Q9H9G7 860 aaKnown RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 IFT122Q9HBG6 1241 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 IFNKQ9P0W0 207 aa10.08□□□□□ -0.8
USP4-202ENST00000351842 NOC2LQ9Y3T9 749 aaKnown RBP10.08□□□□□ -0.8
USP4-202ENST00000351842 DCDC2CA8MYV0 355 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 NAMPTP43490 491 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 GJA8P48165 433 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 GOLGA8FQ08AF8 430 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 GOLGA8DPQ0D2H9 430 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 KCNB1Q14721 858 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 HS1BP3Q53T59 392 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 TAS1R3Q7RTX0 852 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 NECAB2Q7Z6G3 386 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 TNS4Q8IZW8 715 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 SPATA20Q8TB22 786 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 ACCSQ96QU6 501 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 FIZ1Q96SL8 496 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 GCOM2Q9BZD3 368 aaPredicted RBP10.07□□□□□ -0.8
USP4-202ENST00000351842 UPF3AQ9H1J1 476 aaKnown RBP10.07□□□□□ -0.8
USP4-202ENST00000351842 HIPK3Q9H422 1215 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 TOPORSQ9NS56 1045 aaPredicted RBP10.07□□□□□ -0.8
USP4-202ENST00000351842 PARP2Q9UGN5 583 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 HAS3O00219 553 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 CHRNA1P02708 482 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 ARF4P18085 180 aaPredicted RBP10.07□□□□□ -0.8
USP4-202ENST00000351842 EIF4BP23588 611 aaKnown RBP10.07□□□□□ -0.8
USP4-202ENST00000351842 CCDC173Q0VFZ6 552 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 SNX17Q15036 470 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 AGPAT3Q9NRZ7 376 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 PCDHA2Q9Y5H9 948 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 MEIS3P2A8K0S8 358 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 TGFB1I1O43294 461 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 KPNA6O60684 536 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 NPTXRO95502 500 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 CCNE1P24864 410 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 RTP1P59025 263 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 TPM4P67936 248 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 APBA1Q02410 837 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 PKN2Q16513 984 aaKnown RBP10.07□□□□□ -0.8
USP4-202ENST00000351842 NT5DC1Q5TFE4 455 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 PDLIM2Q96JY6 352 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 CNOT6LQ96LI5 555 aaKnown RBP10.07□□□□□ -0.8
USP4-202ENST00000351842 EIF2AQ9BY44 585 aaKnown RBP10.07□□□□□ -0.8
USP4-202ENST00000351842 C11orf49Q9H6J7 331 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 PDLIM7Q9NR12 457 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 OGDHLQ9ULD0 1010 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 ST3GAL5Q9UNP4 418 aa10.07□□□□□ -0.8
USP4-202ENST00000351842 ZBBXA8MT70 800 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 N4BP3O15049 544 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 CETN3O15182 167 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 MYL1P05976 194 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 MAPTP10636 758 aaKnown RBP10.06□□□□□ -0.8
USP4-202ENST00000351842 RAG1P15918 1043 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 MUTP22033 750 aa10.06□□□□□ -0.8
USP4-202ENST00000351842 MRPS6P82932 125 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms