RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 BRDTQ58F21 947 aaPredicted RBP20.08■□□□□ 0.81
USP39-201ENST00000323701 EMID1Q96A84 441 aaPredicted RBP20.08■□□□□ 0.81
USP39-201ENST00000323701 WDR24Q96S15 920 aa20.08■□□□□ 0.81
USP39-201ENST00000323701 POP1Q99575 1024 aaKnown RBP20.08■□□□□ 0.81
USP39-201ENST00000323701 PLCB1Q9NQ66 1216 aa20.08■□□□□ 0.81
USP39-201ENST00000323701 ARHGAP25P42331 645 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 VAMP7P51809 220 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 SNRPFP62306 86 aaKnown RBP20.08■□□□□ 0.8
USP39-201ENST00000323701 IGBP1P78318 339 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 CYP27A1Q02318 531 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 DEPTORQ8TB45 409 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 POMGNT1Q8WZA1 660 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 BICD1Q96G01 975 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 EDEM3Q9BZQ6 932 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 ZNHIT6Q9NWK9 470 aaKnown RBP20.08■□□□□ 0.8
USP39-201ENST00000323701 ERAP1Q9NZ08 941 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 TRIM10Q9UDY6 481 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 GJD2Q9UKL4 321 aa20.08■□□□□ 0.8
USP39-201ENST00000323701 RCCD1A6NED2 376 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 CCP110O43303 1012 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 PNMA6AP0CW24 399 aaPredicted RBP20.07■□□□□ 0.8
USP39-201ENST00000323701 INSRRP14616 1297 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 CYP2B6P20813 491 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 GCLMP48507 274 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 CLCN3P51790 818 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 ETF1P62495 437 aaKnown RBP20.07■□□□□ 0.8
USP39-201ENST00000323701 CDK17Q00537 523 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 LAMTOR4Q0VGL1 99 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 CYP4F22Q6NT55 531 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 INTS8Q75QN2 995 aaKnown RBP20.07■□□□□ 0.8
USP39-201ENST00000323701 PPP1R13LQ8WUF5 828 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 FBXL18Q96ME1 805 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 ZMYND15Q9H091 742 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 EVPLQ92817 2033 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 GTPBP10A4D1E9 387 aaKnown RBP20.07■□□□□ 0.8
USP39-201ENST00000323701 TULP1O00294 542 aaPredicted RBP20.07■□□□□ 0.8
USP39-201ENST00000323701 SRGAP2CP0DJJ0 459 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 EIF4A3P38919 411 aaKnown RBP20.07■□□□□ 0.8
USP39-201ENST00000323701 SLC26A2P50443 739 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 ARID5AQ03989 594 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 LMO3Q8TAP4 145 aa20.07■□□□□ 0.8
USP39-201ENST00000323701 TARS2Q9BW92 718 aaKnown RBP20.07■□□□□ 0.8
USP39-201ENST00000323701 TOPORSQ9NS56 1045 aaPredicted RBP20.07■□□□□ 0.8
USP39-201ENST00000323701 ZSWIM8A7E2V4 1837 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 SIP14410 1827 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 K7ERI5 159 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 ADCY3O60266 1144 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 HBP1O60381 514 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 WNT7BP56706 349 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 INHBEP58166 350 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 CCDC127Q96BQ5 260 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 ARHGAP39Q9C0H5 1083 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 DNAI1Q9UI46 699 aa20.06■□□□□ 0.8
USP39-201ENST00000323701 C22orf31O95567 290 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 HOXC6P09630 235 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 KRT13P13646 458 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 RBM10P98175 930 aaKnown RBP20.05■□□□□ 0.8
USP39-201ENST00000323701 MYL7Q01449 175 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 RAPGEF1Q13905 1077 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 ZBTB41Q5SVQ8 909 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 IER5Q5VY09 327 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 OLFML2BQ68BL8 750 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 IQCEQ6IPM2 695 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 CCDC102AQ96A19 550 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 FAM213AQ9BRX8 229 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 ZFYVE28Q9HCC9 887 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 RIOK3O14730 519 aaKnown RBP20.05■□□□□ 0.8
USP39-201ENST00000323701 MMP3P08254 477 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 ZNF865P0CJ78 1059 aaPredicted RBP20.05■□□□□ 0.8
USP39-201ENST00000323701 LIG4P49917 911 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 ENOX2Q16206 610 aaKnown RBP20.05■□□□□ 0.8
USP39-201ENST00000323701 ASTE1Q2TB18 679 aaPredicted RBP20.05■□□□□ 0.8
USP39-201ENST00000323701 EFCAB12Q6NXP0 572 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 RHPN2Q8IUC4 686 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 METTL13Q8N6R0 699 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 RNF149Q8NC42 400 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 OR6J1Q8NGC5 347 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 PARD3BQ8TEW8 1205 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 KCNN1Q92952 543 aa20.05■□□□□ 0.8
USP39-201ENST00000323701 SUCLA2Q9P2R7 463 aaPredicted RBP20.05■□□□□ 0.8
USP39-201ENST00000323701 TMEM88BA6NKF7 163 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 MAPK13O15264 365 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 PPFIA4O75335 1185 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 TM4SF4P48230 202 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 CAP1Q01518 475 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 TNFAIP2Q03169 654 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 STRN3Q13033 797 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 SFMBT2Q5VUG0 894 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 SMC1BQ8NDV3 1235 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 PSPC1Q8WXF1 523 aaKnown RBP20.04■□□□□ 0.8
USP39-201ENST00000323701 ELMO3Q96BJ8 720 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 LACRTQ9GZZ8 138 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 TMEM117Q9H0C3 514 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 INTS2Q9H0H0 1204 aaKnown RBP20.04■□□□□ 0.8
USP39-201ENST00000323701 CCDC113Q9H0I3 377 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.04■□□□□ 0.89e-9■■■■■ 111.8
USP39-201ENST00000323701 STYXL1Q9Y6J8 313 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 LRRIQ3A6PVS8 624 aaPredicted RBP20.04■□□□□ 0.8
USP39-201ENST00000323701 H0YCG3 227 aa20.04■□□□□ 0.8
USP39-201ENST00000323701 H3BRB1 525 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms