RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PRMT1Q99873 361 aaKnown RBP12.26□□□□□ -0.45
VPS39-201ENST00000318006 MXD3Q9BW11 206 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 NOD2Q9HC29 1040 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 MRPL40Q9NQ50 206 aaKnown RBP12.26□□□□□ -0.45
VPS39-201ENST00000318006 DONSONQ9NYP3 566 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 EHD2Q9NZN4 543 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 SUGT1Q9Y2Z0 365 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 F5H6K3 240 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 HSPA4LO95757 839 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 CHN1P15882 459 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 KLRC3Q07444 240 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 NBPF20Q3BBV1 942 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 NUDCD3Q8IVD9 361 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 CNPY4Q8N129 248 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 DCLK2Q8N568 766 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 PIGOQ8TEQ8 1089 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 CFAP36Q96G28 342 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 SATB2Q9UPW6 733 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 ATF5Q9Y2D1 282 aaPredicted RBP12.26□□□□□ -0.45
VPS39-201ENST00000318006 CCDC22O60826 627 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 ATICP31939 592 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 PGM1P36871 562 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 QRICH1Q2TAL8 776 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 PDXDC2PQ6P474 469 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 RNF169Q8NCN4 708 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 SLC26A7Q8TE54 656 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 USP6NLQ92738 828 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 POLR3CQ9BUI4 534 aaPredicted RBP12.26□□□□□ -0.45
VPS39-201ENST00000318006 PIM2Q9P1W9 311 aa12.26□□□□□ -0.45
VPS39-201ENST00000318006 SFI1A8K8P3 1242 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 ZNF185O15231 689 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 KRT38O76015 456 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 PSMD7P51665 324 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 NEK2P51955 445 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 NKX1-1Q15270 411 aaPredicted RBP12.25□□□□□ -0.45
VPS39-201ENST00000318006 RARS2Q5T160 578 aaKnown RBP12.25□□□□□ -0.45
VPS39-201ENST00000318006 MARCH10Q8NA82 808 aaPredicted RBP12.25□□□□□ -0.45
VPS39-201ENST00000318006 DEPDC1BQ8WUY9 529 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 ANKRD36BP1Q96IX9 119 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 NACA2Q9H009 215 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 TRPV6Q9H1D0 765 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.25□□□□□ -0.45
VPS39-201ENST00000318006 SPATA31A1Q5TZJ5 1347 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 E9PMD0 336 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 CAPN9O14815 690 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 SEC24CP53992 1094 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 TMEM259Q4ZIN3 620 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 SBK1Q52WX2 424 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 SPOPLQ6IQ16 392 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 ADGRF4Q8IZF3 695 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 MED10Q9BTT4 135 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 GGT7Q9UJ14 662 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 RIMS1Q86UR5 1692 aaKnown RBP12.25□□□□□ -0.45
VPS39-201ENST00000318006 KDM1AO60341 852 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 NTSR2O95665 410 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 AKR1B1P15121 316 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 SEMA3FQ13275 785 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 PRPSAP1Q14558 356 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 RABGAP1LQ5R372 815 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 CATSPER1Q8NEC5 780 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 EDEM3Q9BZQ6 932 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 TMEM51Q9NW97 253 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 IPO11Q9UI26 975 aaKnown RBP12.25□□□□□ -0.45
VPS39-201ENST00000318006 ITIH6Q6UXX5 1313 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 TJP3O95049 919 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 VPS72Q15906 364 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 SFR1Q86XK3 245 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 TC2NQ8N9U0 490 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 PALMDQ9NP74 551 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 LIMA1Q9UHB6 759 aaKnown RBP12.25□□□□□ -0.45
VPS39-201ENST00000318006 FBXO2Q9UK22 296 aaPredicted RBP12.25□□□□□ -0.45
VPS39-201ENST00000318006 FEM1BQ9UK73 627 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 AKT3Q9Y243 479 aa12.25□□□□□ -0.45
VPS39-201ENST00000318006 PP2D1A8MPX8 630 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 PRELPP51888 382 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 CYLC2Q14093 348 aaPredicted RBP12.24□□□□□ -0.45
VPS39-201ENST00000318006 SMIM5Q71RC9 77 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 ZIM3Q96PE6 472 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 ING2Q9H160 280 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 SENP1Q9P0U3 644 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 AMACRQ9UHK6 382 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 PFDN6O15212 129 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 GSTA4O15217 222 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 FOXN1O15353 648 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 TLR3O15455 904 aaKnown RBP12.24□□□□□ -0.45
VPS39-201ENST00000318006 KRT14P02533 472 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 JAK3P52333 1124 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 ANTXR2P58335 489 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 GPC5P78333 572 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 KRT39Q6A163 491 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 NOA1Q8NC60 698 aaKnown RBP12.24□□□□□ -0.45
VPS39-201ENST00000318006 TBC1D16Q8TBP0 767 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 CALN1Q9BXU9 219 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 DNAJC12Q9UKB3 198 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 SNX5Q9Y5X3 404 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 TAF6LQ9Y6J9 622 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 CEP170BQ9Y4F5 1589 aaPredicted RBP12.24□□□□□ -0.45
VPS39-201ENST00000318006 POTEB3A0JP26 581 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 POTECB2RU33 542 aa12.24□□□□□ -0.45
VPS39-201ENST00000318006 PSMD14O00487 310 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms