RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SAC3D1A6NKF1 404 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 PECAM1P16284 738 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 TTKP33981 857 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 SWI5Q1ZZU3 235 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 DNAL1Q4LDG9 190 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 SNX30Q5VWJ9 437 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 KCNS3Q9BQ31 491 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ESYT1Q9BSJ8 1104 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 NOC4LQ9BVI4 516 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 STK17AQ9UEE5 414 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 IQSEC3Q9UPP2 1182 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 STARD13Q9Y3M8 1113 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 N6AMT1Q9Y5N5 214 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 SMARCA4P51532 1647 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 TRIM38O00635 465 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 SASH3O75995 380 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 KRT36O76013 467 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 HSPA4LO95757 839 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 RGS2P41220 211 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ARL4CP56559 192 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 STK4Q13043 487 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 PDZK1Q5T2W1 519 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 TDRPQ86YL5 185 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 DNAAF1Q8NEP3 725 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ZC3H15Q8WU90 426 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 OSBP2Q969R2 916 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 UBXN6Q9BZV1 441 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 NSFL1CQ9UNZ2 370 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 RBMXL2O75526 392 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ATP6V1B1P15313 513 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 HMOX2P30519 316 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 PGDP52209 483 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 RPS7P62081 194 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 KBTBD12Q3ZCT8 623 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 BEND6Q5SZJ8 279 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ITPRIPL1Q6GPH6 555 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ATG14Q6ZNE5 492 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 TTC39CQ8N584 583 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 C10orf53Q8N6V4 93 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 SMG7Q92540 1137 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF556Q9HAH1 456 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 GTSE1Q9NYZ3 720 aa8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 RBMX2Q9Y388 322 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-201ENST00000313860 NPIPA5A0A0B4J1W7 369 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 KRIT1O00522 736 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 P4HBP07237 508 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 SKIV2L2P42285 1042 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 FRA10AC1Q70Z53 315 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 SUGP1Q8IWZ8 645 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 WDR36Q8NI36 951 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 GOLGA2P5Q9HBQ8 144 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 INTS10Q9NVR2 710 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 SENP1Q9P0U3 644 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF219Q9P2Y4 722 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 TRIM33Q9UPN9 1127 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 NDUFB5O43674 189 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CHMLP26374 656 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CASP14P31944 242 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CHRNA3P32297 505 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ACADVLP49748 655 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 KPNA2P52292 529 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 EFTUD2Q15029 972 aaKnown RBP eCLIP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 COMTD1Q86VU5 262 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 SPICE1Q8N0Z3 855 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 NUP93Q8N1F7 819 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 GAS2L2Q8NHY3 880 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 RABGGTAQ92696 567 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 TADA1Q96BN2 335 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 RNFT2Q96EX2 444 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 COG3Q96JB2 828 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 TMEM138Q9NPI0 162 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ST7Q9NRC1 585 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF212Q9UDV6 495 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 SCAF8Q9UPN6 1271 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 MDFIC2A0A1B0GVS7 189 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 TMCC1O94876 653 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CD19P15391 556 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 SCP2P22307 547 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 LHCGRP22888 699 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 BNIP2Q12982 314 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 SCGB2A2Q13296 93 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 DYRK1AQ13627 763 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF613Q6PF04 617 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF615Q8N8J6 731 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 GANCQ8TET4 914 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 LIN37Q96GY3 246 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 XKR8Q9H6D3 395 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 GINS2Q9Y248 185 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CENPXA8MT69 81 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 MAPK13O15264 365 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 KPNA6O60684 536 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 FAM228BP0C875 321 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ALOX12P18054 663 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 MRPS25P82663 173 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 WASHC2DQ5SRD0 308 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 TIGD3Q6B0B8 471 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 MOSPD2Q8NHP6 518 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 DTX3LQ8TDB6 740 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 DEPDC1BQ8WUY9 529 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms