RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DTX3LQ8TDB6 740 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 ADD3Q9UEY8 706 aaKnown RBP18.43■□□□□ 0.54
SYNPO-201ENST00000307662 PPP1R12AO14974 1030 aaPredicted RBP18.43■□□□□ 0.54
SYNPO-201ENST00000307662 SLC4A1P02730 911 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 SCG3Q8WXD2 468 aaKnown RBP18.43■□□□□ 0.54
SYNPO-201ENST00000307662 ZIM3Q96PE6 472 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 SLC13A1Q9BZW2 595 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 SRGNP10124 158 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 ARL13BQ3SXY8 428 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 SYDE1Q6ZW31 735 aaPredicted RBP18.43■□□□□ 0.54
SYNPO-201ENST00000307662 SLC5A4Q9NY91 659 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 A2ML1A8K2U0 1454 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 GLI2P10070 1586 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 CYP27B1O15528 508 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 SMARCA1P28370 1054 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 PAPOLAP51003 745 aaKnown RBP18.43■□□□□ 0.54
SYNPO-201ENST00000307662 FXR1P51114 621 aaKnown RBP eCLIP18.43■□□□□ 0.54
SYNPO-201ENST00000307662 AP1B1Q10567 949 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 NBPF20Q3BBV1 942 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 ZNF746Q6NUN9 644 aaPredicted RBP18.43■□□□□ 0.54
SYNPO-201ENST00000307662 DNAJC9Q8WXX5 260 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 CCDC90BQ9GZT6 254 aa18.43■□□□□ 0.54
SYNPO-201ENST00000307662 DHX36Q9H2U1 1008 aaKnown RBP18.43■□□□□ 0.54
SYNPO-201ENST00000307662 PP2D1A8MPX8 630 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 K7ERI5 159 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 ARHGEF9O43307 516 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 FCER1AP12319 257 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 OSTNP61366 133 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 RPF1Q9H9Y2 349 aaKnown RBP18.42■□□□□ 0.54
SYNPO-201ENST00000307662 KIAA1586Q9HCI6 787 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 SLC12A6Q9UHW9 1150 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 SPDYE2BA6NHP3 402 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 CCT8L1PA6NM43 557 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 SPDYE6P0CI01 402 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 SLC18A3Q16572 532 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 PTGISQ16647 500 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.42■□□□□ 0.54
SYNPO-201ENST00000307662 RBM12Q9NTZ6 932 aaKnown RBP18.42■□□□□ 0.54
SYNPO-201ENST00000307662 BSDC1Q9NW68 430 aaPredicted RBP18.42■□□□□ 0.54
SYNPO-201ENST00000307662 DDX56Q9NY93 547 aaKnown RBP18.42■□□□□ 0.54
SYNPO-201ENST00000307662 TUBE1Q9UJT0 475 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 SSU72P8A0A1W2PR75 194 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 VAMP7P51809 220 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 SUSD4Q5VX71 490 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 FAM8A1Q9UBU6 413 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 HEY1Q9Y5J3 304 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 PSMC1P62191 440 aaKnown RBP18.42■□□□□ 0.54
SYNPO-201ENST00000307662 MRPS35P82673 323 aaKnown RBP18.42■□□□□ 0.54
SYNPO-201ENST00000307662 DNAL1Q4LDG9 190 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 SGMS1Q86VZ5 419 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 KLHL8Q9P2G9 620 aaPredicted RBP18.42■□□□□ 0.54
SYNPO-201ENST00000307662 CDC42BPGQ6DT37 1551 aa18.42■□□□□ 0.54
SYNPO-201ENST00000307662 KDM1AO60341 852 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 SERPINB2P05120 415 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 ALX1Q15699 326 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 CNGA3Q16281 694 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 PPP1R18Q6NYC8 613 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 TMEM270Q6UE05 265 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 TRIM10Q9UDY6 481 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 PCDHA6Q9UN73 950 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 PCDHA8Q9Y5H6 950 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 MED14O60244 1454 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 POTEB3A0JP26 581 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 POTECB2RU33 542 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 PHF2O75151 1096 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 ENO1P06733 434 aaKnown RBP18.41■□□□□ 0.54
SYNPO-201ENST00000307662 POTEBQ6S5H4 581 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 FRMD5Q7Z6J6 570 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 TRIM51Q9BSJ1 452 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 CPSF3Q9UKF6 684 aaKnown RBP18.41■□□□□ 0.54
SYNPO-201ENST00000307662 ASAP2O43150 1006 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 PLA2G4AP47712 749 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 ZNF667Q5HYK9 610 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 CCNYL1Q8N7R7 359 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 ATL2Q8NHH9 583 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 ARL8AQ96BM9 186 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 KRT7P08729 469 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 PRELPP51888 382 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 KDSRQ06136 332 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 METTL23Q86XA0 190 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 SGSM3Q96HU1 749 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 FAM193BQ96PV7 902 aaPredicted RBP18.41■□□□□ 0.54
SYNPO-201ENST00000307662 RNF17Q9BXT8 1623 aaKnown RBP18.41■□□□□ 0.54
SYNPO-201ENST00000307662 CDH16O75309 829 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 EXOSC10Q01780 885 aaKnown RBP18.41■□□□□ 0.54
SYNPO-201ENST00000307662 HABP4Q5JVS0 413 aaKnown RBP18.41■□□□□ 0.54
SYNPO-201ENST00000307662 MMGT1Q8N4V1 131 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 OR2W6PQ8NHA6 318 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 RAPGEF5Q92565 580 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 TMEM47Q9BQJ4 181 aa18.41■□□□□ 0.54
SYNPO-201ENST00000307662 ZBTB5O15062 677 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 FAM47CQ5HY64 1035 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ARMCX2Q7L311 632 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ANXA13P27216 316 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 AARSP49588 968 aaKnown RBP eCLIP18.4■□□□□ 0.54
SYNPO-201ENST00000307662 SEC24CP53992 1094 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 DPYDQ12882 1025 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 CYTH1Q15438 398 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 ZNF394Q53GI3 561 aa18.4■□□□□ 0.54
SYNPO-201ENST00000307662 FAM196AQ6ZSG2 479 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms