RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CACYBPQ9HB71 228 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 GGT7Q9UJ14 662 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 K7ERI5 159 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 PGM1P36871 562 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 FOXP4Q8IVH2 680 aaPredicted RBP13.68□□□□□ -0.22
COL3A1-201ENST00000304636 OR2W6PQ8NHA6 318 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 ASNSD1Q9NWL6 643 aa13.68□□□□□ -0.22
COL3A1-201ENST00000304636 PPP1R3GB7ZBB8 358 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 SLC1A1P43005 524 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 INPP1P49441 399 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 ZBTB33Q86T24 672 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 SLC35G2Q8TBE7 412 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 SNX25Q9H3E2 840 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 TDP2O95551 362 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 PRDX5P30044 214 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 ANTXR2P58335 489 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 TMEM179Q6ZVK1 233 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 PPM1NQ8N819 430 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 FAM205CA6NFA0 338 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L15C9J2P7 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L13C9JLJ4 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L11C9JVI0 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L18D6R9N7 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L22D6RA61 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L17D6RBQ6 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L19D6RCP7 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L20D6RJB6 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 TAC1P20366 129 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 COPS2P61201 443 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 OCRLQ01968 901 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L24Q0WX57 530 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP17L6PQ6QN14 398 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 TRIM72Q6ZMU5 477 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 LONP2Q86WA8 852 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 AP5Z1O43299 807 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 USP11P51784 963 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 GRAPQ13588 217 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 PRKG1Q13976 671 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 SCARA5Q6ZMJ2 495 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 GRAPLQ8TC17 118 aaPredicted RBP13.67□□□□□ -0.22
COL3A1-201ENST00000304636 PAGR1Q9BTK6 254 aa13.67□□□□□ -0.22
COL3A1-201ENST00000304636 ECM2O94769 699 aaPredicted RBP13.66□□□□□ -0.22
COL3A1-201ENST00000304636 KRT7P08729 469 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 OCA2Q04671 838 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 CLEC4GQ6UXB4 293 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 SLC26A7Q8TE54 656 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 DHX38Q92620 1227 aaKnown RBP13.66□□□□□ -0.22
COL3A1-201ENST00000304636 SYN2Q92777 582 aaPredicted RBP13.66□□□□□ -0.22
COL3A1-201ENST00000304636 ATP6V1E2Q96A05 226 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 STK33Q9BYT3 514 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 GCOM2Q9BZD3 368 aaPredicted RBP13.66□□□□□ -0.22
COL3A1-201ENST00000304636 SMARCAL1Q9NZC9 954 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 ANGPTL3Q9Y5C1 460 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 UTYO14607 1347 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 TBXAS1P24557 533 aaPredicted RBP13.66□□□□□ -0.22
COL3A1-201ENST00000304636 RANBP1P43487 201 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 GALCP54803 685 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 C16orf87Q6PH81 154 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 TMEM270Q6UE05 265 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 TRIM67Q6ZTA4 783 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 BBS5Q8N3I7 341 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 GFM2Q969S9 779 aaKnown RBP13.66□□□□□ -0.22
COL3A1-201ENST00000304636 CEP95Q96GE4 821 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 TRPV6Q9H1D0 765 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 MAGED2Q9UNF1 606 aaPredicted RBP13.66□□□□□ -0.22
COL3A1-201ENST00000304636 TRAF3IP3Q9Y228 551 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 IGBP1P78318 339 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 USP49Q70CQ1 688 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 PASD1Q8IV76 773 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 KIFC3Q9BVG8 833 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 PPCSQ9HAB8 311 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 SERPINB4P48594 390 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 HIC1Q14526 733 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 NBPF20Q3BBV1 942 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 RARS2Q5T160 578 aaKnown RBP13.66□□□□□ -0.22
COL3A1-201ENST00000304636 BTBD6Q96KE9 485 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 ERGIC2Q96RQ1 377 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 STK32BQ9NY57 414 aa13.66□□□□□ -0.22
COL3A1-201ENST00000304636 CCDC195A0A1B0GUA6 201 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 UCHL3P15374 230 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 STK4Q13043 487 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 CYB5D1Q6P9G0 228 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 CATSPER1Q8NEC5 780 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 MCPH1Q8NEM0 835 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 TAF6LQ9Y6J9 622 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 ALKQ9UM73 1620 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 LRRIQ3A6PVS8 624 aaPredicted RBP13.65□□□□□ -0.22
COL3A1-201ENST00000304636 CDO1Q16878 200 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 LONRF1Q17RB8 773 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 RSRC2Q7L4I2 434 aaKnown RBP13.65□□□□□ -0.22
COL3A1-201ENST00000304636 GIPC2Q8TF65 315 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 KRT82Q9NSB4 513 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 SLC4A7Q9Y6M7 1214 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 CHEK2O96017 543 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 HP1BP3Q5SSJ5 553 aaPredicted RBP13.65□□□□□ -0.22
COL3A1-201ENST00000304636 NCAPG2Q86XI2 1143 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 DNAJC7Q99615 494 aa13.65□□□□□ -0.22
COL3A1-201ENST00000304636 RPF1Q9H9Y2 349 aaKnown RBP13.65□□□□□ -0.22
COL3A1-201ENST00000304636 UVRAGQ9P2Y5 699 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms