RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 HDDC2Q7Z4H3 204 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 LEMD2Q8NC56 503 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SUPT20HQ8NEM7 779 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 SLC30A5Q8TAD4 765 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 VPS50Q96JG6 964 aa5.57□□□□□ -1.52
SCN1A-201ENST00000303395 FBXO2Q9UK22 296 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-201ENST00000303395 C15orf38-AP3S2A0A0A6YYH1 394 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 H3BRJ5 948 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 KCNK3O14649 394 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 CCDC166P0CW27 439 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 POLD1P28340 1107 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 GTF2H1P32780 548 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 CCR3P51677 355 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 DPYDQ12882 1025 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 KRT31Q15323 416 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 RRAGAQ7L523 313 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ARPINQ7Z6K5 226 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 TRIM59Q8IWR1 403 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 VPS39Q96JC1 886 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ZFP42Q96MM3 310 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 OLFM1Q99784 485 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 MRPS26Q9BYN8 205 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 DSEQ9UL01 958 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 LMO7Q8WWI1 1683 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 KRT14P02533 472 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 NUDT17P0C025 328 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 GRK2P25098 689 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 MSH2P43246 934 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 CAPRIN1Q14444 709 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 TJAP1Q5JTD0 557 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 GJC2Q5T442 439 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 MTHFD1LQ6UB35 978 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 KLHDC4Q8TBB5 520 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 NACC1Q96RE7 527 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ZSWIM4Q9H7M6 989 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 PLK2Q9NYY3 685 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 FAM47DPA6NHR8 397 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 POTEMA6NI47 508 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 NPM3O75607 178 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 POTEHQ6S545 545 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 POTEGQ6S5H5 508 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 CHURC1Q8WUH1 139 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 OLFML3Q9NRN5 406 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 TBCCD1Q9NVR7 557 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 STX18Q9P2W9 335 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 VPS9D1Q9Y2B5 631 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 NID2Q14112 1375 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 MROH7-TTC4A0A0A0MT08 1334 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 MEIS1O00470 390 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ADCY3O60266 1144 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 TNNC2P02585 160 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ATXN8OSP0DMR3 200 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 RARGP13631 454 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 CYP7A1P22680 504 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ESCO1Q5FWF5 840 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ZC3H18Q86VM9 953 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 FBXL13Q8NEE6 735 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 BTN2A2Q8WVV5 523 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 LRRC39Q96DD0 335 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 NT5C1BQ96P26 610 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 MAP3K20Q9NYL2 800 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 NFU1Q9UMS0 254 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 METP08581 1390 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 TMEM253P0C7T8 217 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 PAX3P23760 479 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 CDC42EP1Q00587 391 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 PRPSAP1Q14558 356 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 NLRX1Q86UT6 975 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 BBS5Q8N3I7 341 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 SRBD1Q8N5C6 995 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 PBXIP1Q96AQ6 731 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 PPWD1Q96BP3 646 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 NLRP3Q96P20 1036 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 FAM193BQ96PV7 902 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 DHX36Q9H2U1 1008 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 VAT1LQ9HCJ6 419 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 FNDC3AQ9Y2H6 1198 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ASXL3Q9C0F0 2248 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 RBM47A0AV96 593 aaKnown RBP5.56□□□□□ -1.52
SCN1A-201ENST00000303395 ATP5J2-PTCD1G3V325 749 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 E2F6O75461 281 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 PYGMP11217 842 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 USP11P51784 963 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 SLC44A4Q53GD3 710 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 CLEC4GQ6UXB4 293 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 KRT77Q7Z794 578 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 AHI1Q8N157 1196 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 RASSF5Q8WWW0 418 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 CYFIP2Q96F07 1278 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 MAGEB18Q96M61 343 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 AP1M1Q9BXS5 423 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 KRT82Q9NSB4 513 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 MAN1B1Q9UKM7 699 aa5.56□□□□□ -1.52
SCN1A-201ENST00000303395 EXOC1LA0A1B0GW35 172 aa5.55□□□□□ -1.52
SCN1A-201ENST00000303395 MCF2LO15068 1137 aa5.55□□□□□ -1.52
SCN1A-201ENST00000303395 EXOSC10Q01780 885 aaKnown RBP5.55□□□□□ -1.52
SCN1A-201ENST00000303395 JDP2Q8WYK2 163 aa5.55□□□□□ -1.52
SCN1A-201ENST00000303395 NCLNQ969V3 563 aa5.55□□□□□ -1.52
SCN1A-201ENST00000303395 VCPIP1Q96JH7 1222 aa5.55□□□□□ -1.52
SCN1A-201ENST00000303395 SCYL1Q96KG9 808 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms