RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 NEMP1O14524 444 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 GNAT1P11488 350 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 PAMP19021 973 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 TAC1P20366 129 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 PMS2P54278 862 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 ANO4Q32M45 955 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 LDHDQ86WU2 507 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 ZBED8Q8IZ13 594 aa12.21□□□□□ -0.46
USP53-201ENST00000274030 GYG2O15488 501 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 KRT38O76015 456 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 CC2D1AQ6P1N0 951 aaPredicted RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 HAUS6Q7Z4H7 955 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 GIMAP8Q8ND71 665 aaPredicted RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 DPF2Q92785 391 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 MMP19Q99542 508 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 RPAP3Q9H6T3 665 aaPredicted RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 TSPOAP1O95153 1857 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 HADHAP40939 763 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 PDIA2Q13087 525 aaKnown RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 LRRC31Q6UY01 552 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 IRX2Q9BZI1 471 aaPredicted RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 SUN2Q9UH99 717 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 CDHR2Q9BYE9 1310 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 ATP1A1P05023 1023 aaKnown RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 PAPOLAP51003 745 aaKnown RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 MKRN4PQ13434 485 aaPredicted RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 PPP4R4Q6NUP7 873 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 SERPINI1Q99574 410 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 SUGT1Q9Y2Z0 365 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 CYP26A1O43174 497 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 SNX2O60749 519 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 SPAG7O75391 227 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 BCAR1P56945 870 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 HEATR6Q6AI08 1181 aaKnown RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 RNF149Q8NC42 400 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 KIF12Q96FN5 646 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 SLC13A4Q9UKG4 626 aa12.2□□□□□ -0.46
USP53-201ENST00000274030 AGO2Q9UKV8 859 aaKnown RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 APOBEC2Q9Y235 224 aaKnown RBP12.2□□□□□ -0.46
USP53-201ENST00000274030 PFDN1O60925 122 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 LCP1P13796 627 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 SFNP31947 248 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 ACCSLQ4AC99 568 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 TTC13Q8NBP0 860 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 MRPL4Q9BYD3 311 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 UPF3AQ9H1J1 476 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 ACAD9Q9H845 621 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 STRIP2Q9ULQ0 834 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 MYO3BQ8WXR4 1341 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 KCNA1Q09470 495 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 CAPRIN1Q14444 709 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 DCAF4L1Q3SXM0 396 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 OR6P1Q8NGX9 317 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 ALG13Q9NP73 1137 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 AFF4Q9UHB7 1163 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 SCOCQ9UIL1 159 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 SAMD9LQ8IVG5 1584 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 EIF4E1BA6NMX2 242 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 DIAPH2O60879 1101 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 SKIP12755 728 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 BRAFP15056 766 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 ERFP50548 548 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 MXD4Q14582 209 aaPredicted RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 GLE1Q53GS7 698 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 CCDC137Q6PK04 289 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 GUF1Q8N442 669 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 NEDD1Q8NHV4 660 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 MMTAG2Q9BU76 263 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 TUBB6Q9BUF5 446 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 DIS3Q9Y2L1 958 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 ESRRBO95718 433 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 HOXA7P31268 230 aaPredicted RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 ATP2C1P98194 919 aaPredicted RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 ALX1Q15699 326 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 ATG9AQ7Z3C6 839 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 SNX19Q92543 992 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 AMACRQ9UHK6 382 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 HPCAL4Q9UM19 191 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 KRT14P02533 472 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 PPARGP37231 505 aaPredicted RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 COPS2P61201 443 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 MTMR2Q13614 643 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 RFX8Q6ZV50 586 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 SLC30A5Q8TAD4 765 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 DRC3Q9H069 523 aa12.19□□□□□ -0.46
USP53-201ENST00000274030 ACTR5Q9H9F9 607 aaPredicted RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 LIMA1Q9UHB6 759 aaKnown RBP12.19□□□□□ -0.46
USP53-201ENST00000274030 CDH6P55285 790 aa12.18□□□□□ -0.46
USP53-201ENST00000274030 NAALADL2Q58DX5 795 aa12.18□□□□□ -0.46
USP53-201ENST00000274030 PPP1R18Q6NYC8 613 aa12.18□□□□□ -0.46
USP53-201ENST00000274030 METTL16Q86W50 562 aaKnown RBP12.18□□□□□ -0.46
USP53-201ENST00000274030 TBXAS1P24557 533 aaPredicted RBP12.18□□□□□ -0.46
USP53-201ENST00000274030 ACOT2P49753 483 aa12.18□□□□□ -0.46
USP53-201ENST00000274030 C12orf60Q5U649 245 aa12.18□□□□□ -0.46
USP53-201ENST00000274030 GPD1LQ8N335 351 aa12.18□□□□□ -0.46
USP53-201ENST00000274030 BTBD6Q96KE9 485 aa12.18□□□□□ -0.46
USP53-201ENST00000274030 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.18□□□□□ -0.46
USP53-201ENST00000274030 ANGPTL2Q9UKU9 493 aa12.18□□□□□ -0.46
USP53-201ENST00000274030 PRDM15P57071 1507 aaPredicted RBP12.18□□□□□ -0.46
USP53-201ENST00000274030 UBA6A0AVT1 1052 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms