RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 KNOP1Q1ED39 458 aaKnown RBP20.36■□□□□ 0.85
UPF1-201ENST00000262803 NBPF10Q6P3W6 841 aaKnown RBP20.36■□□□□ 0.85
UPF1-201ENST00000262803 NBPF15Q8N660 670 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 HSPH1Q92598 858 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 PSMD3O43242 534 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 GUCY1A2P33402 732 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 TUFT1Q9NNX1 390 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 NDE1Q9NXR1 346 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 SNX19Q92543 992 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 TNIP3Q96KP6 325 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 ALKQ9UM73 1620 aa20.36■□□□□ 0.85
UPF1-201ENST00000262803 ANKRD65E5RJM6 399 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 COPEO14579 308 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 NCK2O43639 380 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 OCRLQ01968 901 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 DPF2Q92785 391 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 ELAC2Q9BQ52 826 aaKnown RBP20.35■□□□□ 0.85
UPF1-201ENST00000262803 OLA1Q9NTK5 396 aaKnown RBP20.35■□□□□ 0.85
UPF1-201ENST00000262803 GINM1Q9NU53 330 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 MRFAP1Q9Y605 127 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 PNPLA7Q6ZV29 1317 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 GUCY2CP25092 1073 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 TRIM28Q13263 835 aaKnown RBP20.35■□□□□ 0.85
UPF1-201ENST00000262803 PTK2BQ14289 1009 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 EPHA7Q15375 998 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 TEKT2Q9UIF3 430 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 FBXO2Q9UK22 296 aaPredicted RBP20.35■□□□□ 0.85
UPF1-201ENST00000262803 A0A1W2PQC6 194 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 TBC1D19Q8N5T2 526 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 ZWILCHQ9H900 591 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 RAVER2Q9HCJ3 691 aaKnown RBP20.35■□□□□ 0.85
UPF1-201ENST00000262803 RNF17Q9BXT8 1623 aaKnown RBP20.35■□□□□ 0.85
UPF1-201ENST00000262803 MMEP08473 750 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 PGBD4Q96DM1 585 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 AFF2P51816 1311 aa20.35■□□□□ 0.85
UPF1-201ENST00000262803 MYO1DO94832 1006 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 TSSK1BQ9BXA7 367 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 ZCCHC17Q9NP64 241 aaKnown RBP20.34■□□□□ 0.85
UPF1-201ENST00000262803 C19orf81C9J6K1 198 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 BANK1Q8NDB2 785 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 TRAIPQ9BWF2 469 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 MAGED2Q9UNF1 606 aaPredicted RBP20.34■□□□□ 0.85
UPF1-201ENST00000262803 ESYT3A0FGR9 886 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 POTEFA5A3E0 1075 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 FAM196BA6NMK8 535 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 POTEIP0CG38 1075 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 MTF1Q14872 753 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 POTEGQ6S5H5 508 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 POTEEQ6S8J3 1075 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 LPAR1Q92633 364 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 CTIFO43310 598 aaKnown RBP20.34■□□□□ 0.85
UPF1-201ENST00000262803 SKIP12755 728 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 RNF168Q8IYW5 571 aaPredicted RBP20.34■□□□□ 0.85
UPF1-201ENST00000262803 WDR24Q96S15 920 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 KDM6AO15550 1401 aaPredicted RBP20.34■□□□□ 0.85
UPF1-201ENST00000262803 MYO1CO00159 1063 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 TDP2O95551 362 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 VAMP7P51809 220 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 GPD1LQ8N335 351 aa20.34■□□□□ 0.85
UPF1-201ENST00000262803 NOP14P78316 857 aaKnown RBP20.33■□□□□ 0.85
UPF1-201ENST00000262803 SLC12A1Q13621 1099 aa20.33■□□□□ 0.85
UPF1-201ENST00000262803 TBCCQ15814 346 aa20.33■□□□□ 0.85
UPF1-201ENST00000262803 DYDC2Q96IM9 177 aa20.33■□□□□ 0.85
UPF1-201ENST00000262803 SAYSD1Q9NPB0 183 aa20.33■□□□□ 0.85
UPF1-201ENST00000262803 ESRRAP11474 423 aaPredicted RBP20.33■□□□□ 0.85
UPF1-201ENST00000262803 SCN4BQ8IWT1 228 aa20.33■□□□□ 0.85
UPF1-201ENST00000262803 CENPKQ9BS16 269 aa20.33■□□□□ 0.85
UPF1-201ENST00000262803 PIDD1Q9HB75 910 aa20.33■□□□□ 0.85
UPF1-201ENST00000262803 GPBP1L1Q9HC44 474 aaPredicted RBP20.33■□□□□ 0.85
UPF1-201ENST00000262803 ZNF609O15014 1411 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 MDM2Q00987 491 aaPredicted RBP20.33■□□□□ 0.84
UPF1-201ENST00000262803 NEDD1Q8NHV4 660 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 RUBCNQ92622 972 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 N4BP2L2Q92802 583 aaPredicted RBP20.33■□□□□ 0.84
UPF1-201ENST00000262803 CRAMP1Q96RY5 1269 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 TRIM55Q9BYV6 548 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 WNT8AQ9H1J5 351 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 SETD1BQ9UPS6 1966 aaKnown RBP20.33■□□□□ 0.84
UPF1-201ENST00000262803 USP31Q70CQ4 1352 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 GPSM2P81274 684 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 HEMGNQ9BXL5 484 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 DDX47Q9H0S4 455 aaKnown RBP20.33■□□□□ 0.84
UPF1-201ENST00000262803 SUDS3Q9H7L9 328 aaPredicted RBP20.33■□□□□ 0.84
UPF1-201ENST00000262803 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.33■□□□□ 0.84
UPF1-201ENST00000262803 TPX2Q9ULW0 747 aaKnown RBP20.33■□□□□ 0.84
UPF1-201ENST00000262803 UNC13BO14795 1591 aa20.33■□□□□ 0.84
UPF1-201ENST00000262803 ZNF394Q53GI3 561 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 KRT80Q6KB66 452 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 TBC1D1Q86TI0 1168 aaPredicted RBP20.32■□□□□ 0.84
UPF1-201ENST00000262803 POLR3FQ9H1D9 316 aaPredicted RBP20.32■□□□□ 0.84
UPF1-201ENST00000262803 KCNF1Q9H3M0 494 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 SNX17Q15036 470 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 PITPNM3Q9BZ71 974 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 TMEM60Q9H2L4 133 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 SP110Q9HB58 689 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 KCND2Q9NZV8 630 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 CDC42BPBQ9Y5S2 1711 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 FAM187AA6NFU0 413 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 NEMP1O14524 444 aa20.32■□□□□ 0.84
UPF1-201ENST00000262803 SLC16A3O15427 465 aaKnown RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms