RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TMEM150BA6NC51 233 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 H3BRB1 525 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 POLR2BP30876 1174 aaKnown RBP12.53□□□□□ -0.4
VPS4A-201ENST00000254950 FXR1P51114 621 aaKnown RBP eCLIP12.53□□□□□ -0.4
VPS4A-201ENST00000254950 ACVR2BQ13705 512 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 KYAT1Q16773 422 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 ALKBH5Q6P6C2 394 aaKnown RBP12.53□□□□□ -0.4
VPS4A-201ENST00000254950 GPR142Q7Z601 462 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 ZNF507Q8TCN5 953 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 TUT1Q9H6E5 874 aaKnown RBP12.53□□□□□ -0.4
VPS4A-201ENST00000254950 ZNF536O15090 1300 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 NEBLO76041 1014 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 ACOT2P49753 483 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 PMS1P54277 932 aaKnown RBP12.52□□□□□ -0.4
VPS4A-201ENST00000254950 DRAP1Q14919 205 aaPredicted RBP12.52□□□□□ -0.4
VPS4A-201ENST00000254950 DUOXA2Q1HG44 320 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 IQSEC1Q6DN90 963 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 PRPF31Q8WWY3 499 aaKnown RBP12.52□□□□□ -0.4
VPS4A-201ENST00000254950 PSMB7Q99436 277 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 FAM170AA1A519 330 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 PPFIA4O75335 1185 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 TUBBP07437 444 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 VAV2P52735 878 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 NOGQ13253 232 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 PDXDC1Q6P996 788 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 SPIRE2Q8WWL2 714 aa12.52□□□□□ -0.4
VPS4A-201ENST00000254950 THAP12O43422 761 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 CLCN3P51790 818 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 MYBPC2Q14324 1141 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 CELF3Q5SZQ8 465 aaKnown RBP12.52□□□□□ -0.41
VPS4A-201ENST00000254950 DAAM2Q86T65 1068 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 TRIM50Q86XT4 487 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 SLC35F6Q8N357 371 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 PAF1Q8N7H5 531 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 FAM193BQ96PV7 902 aaPredicted RBP12.52□□□□□ -0.41
VPS4A-201ENST00000254950 DUSP9Q99956 384 aaKnown RBP12.52□□□□□ -0.41
VPS4A-201ENST00000254950 MIS12Q9H081 205 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 TRAF3IP3Q9Y228 551 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 PCDHA13Q9Y5I0 950 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 AP5Z1O43299 807 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 CEP104O60308 925 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 PEX10O60683 326 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 LYPLA2O95372 231 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 KLRC1P26715 233 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 PSMC4P43686 418 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 PPP1R2P3Q6NXS1 205 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 ENOSF1Q7L5Y1 443 aa12.52□□□□□ -0.41
VPS4A-201ENST00000254950 LOC102724159A0A0B4J2E5 919 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 TCP1P17987 556 aaKnown RBP12.51□□□□□ -0.41
VPS4A-201ENST00000254950 CD58P19256 250 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 ADCYAP1R1P41586 468 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 PWP2Q15269 919 aaKnown RBP12.51□□□□□ -0.41
VPS4A-201ENST00000254950 ECM1Q16610 540 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 TC2NQ8N9U0 490 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 HYOU1Q9Y4L1 999 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 GYPCP04921 128 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 ACTN2P35609 894 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 MAP2K5Q13163 448 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 ZNF699Q32M78 642 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 ATF7IP2Q5U623 682 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 ABI1Q8IZP0 508 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 TRIM11Q96F44 468 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 PORCNQ9H237 461 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 RBPJLQ9UBG7 517 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 RASAL2Q9UJF2 1139 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 DAAM1Q9Y4D1 1078 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 INSRRP14616 1297 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 NLRP11P59045 1033 aaKnown RBP12.51□□□□□ -0.41
VPS4A-201ENST00000254950 TOGARAM2Q6ZUX3 1019 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 REPS2Q8NFH8 660 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 MYO5AQ9Y4I1 1855 aaKnown RBP12.51□□□□□ -0.41
VPS4A-201ENST00000254950 ADGRG1Q9Y653 693 aa12.51□□□□□ -0.41
VPS4A-201ENST00000254950 TMEM88BA6NKF7 163 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 EXTL3O43909 919 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 GARTP22102 1010 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 TBXAS1P24557 533 aaPredicted RBP12.5□□□□□ -0.41
VPS4A-201ENST00000254950 CA8P35219 290 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 CASP4P49662 377 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 FAM193AP78312 1265 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 DEFB115Q30KQ5 88 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 CFAP221Q4G0U5 840 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 SCARA5Q6ZMJ2 495 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 CBWD1Q9BRT8 395 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 AGPAT5Q9NUQ2 364 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 USTQ9Y2C2 406 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 P4HA2O15460 535 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 RHOXF2BP0C7M4 288 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 UCHL3P15374 230 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 KCNJ6P48051 423 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 SOX10P56693 466 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 CCZ1BP86790 482 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 CCZ1P86791 482 aaPredicted RBP12.5□□□□□ -0.41
VPS4A-201ENST00000254950 WHAMMP3Q1A5X7 153 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 MYRIPQ8NFW9 859 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 ZNF653Q96CK0 615 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 FERMT1Q9BQL6 677 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 RHOXF2Q9BQY4 288 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 ARFGAP3Q9NP61 516 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 COL4A1P02462 1669 aa12.5□□□□□ -0.41
VPS4A-201ENST00000254950 AKAP3O75969 853 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms