RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MED24O75448 989 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 CYP11B2P19099 503 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 RASA1P20936 1047 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 PAPOLAP51003 745 aaKnown RBP15.45■□□□□ 0.06
SDC1-201ENST00000254351 MUM1Q2TAK8 710 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 ZC2HC1CQ53FD0 456 aaPredicted RBP15.45■□□□□ 0.06
SDC1-201ENST00000254351 C9orf72Q96LT7 481 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 CEP63Q96MT8 703 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 ARHGEF3Q9NR81 526 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 DNAJC12Q9UKB3 198 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 ABCB11O95342 1321 aa15.45■□□□□ 0.06
SDC1-201ENST00000254351 GSTTP1A0A1W2PQM5 241 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 PCP11498 1178 aaKnown RBP15.44■□□□□ 0.06
SDC1-201ENST00000254351 DAB2IPQ5VWQ8 1189 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 VSTM1Q6UX27 236 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 SEPT12Q8IYM1 358 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 C2CD2Q9Y426 696 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 A0A1W2PRG0 241 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 GNA14O95837 355 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 PYGMP11217 842 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 CALCOCO2Q13137 446 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 PICALMQ13492 652 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 ARSHQ5FYA8 562 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 CGB2Q6NT52 195 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 EIF1ADQ8N9N8 165 aaKnown RBP15.44■□□□□ 0.06
SDC1-201ENST00000254351 ANKLE1Q8NAG6 615 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 RPGRQ92834 1020 aaKnown RBP15.44■□□□□ 0.06
SDC1-201ENST00000254351 DDX50Q9BQ39 737 aaKnown RBP15.44■□□□□ 0.06
SDC1-201ENST00000254351 TRIM7Q9C029 511 aa15.44■□□□□ 0.06
SDC1-201ENST00000254351 PECAM1P16284 738 aaPredicted RBP15.43■□□□□ 0.06
SDC1-201ENST00000254351 FXR2P51116 673 aaKnown RBP eCLIP15.43■□□□□ 0.06
SDC1-201ENST00000254351 ZNF772Q68DY9 489 aaPredicted RBP15.43■□□□□ 0.06
SDC1-201ENST00000254351 APBB1IPQ7Z5R6 666 aaPredicted RBP15.43■□□□□ 0.06
SDC1-201ENST00000254351 RFFLQ8WZ73 363 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 KIAA1683Q9H0B3 1180 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 SPOPO43791 374 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 NR3C1P04150 777 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 CCDC6Q16204 474 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 PPP1R15BQ5SWA1 713 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 KCTD1Q719H9 257 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 MIGA2Q7L4E1 593 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 SLFN11Q7Z7L1 901 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 REEP2Q9BRK0 252 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 RXFP1Q9HBX9 757 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 BZW2Q9Y6E2 419 aaKnown RBP15.43■□□□□ 0.06
SDC1-201ENST00000254351 ZNF804BA4D1E1 1349 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 CES2O00748 559 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 CLSTN1O94985 981 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 CETPP11597 493 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 POLD1P28340 1107 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 GBP1P32455 592 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 ZNF131P52739 623 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 TMED2Q15363 201 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 EPHA7Q15375 998 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 GALNTL6Q49A17 601 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 COL23A1Q86Y22 540 aaPredicted RBP15.43■□□□□ 0.06
SDC1-201ENST00000254351 TBC1D16Q8TBP0 767 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 PIGOQ8TEQ8 1089 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 SEC14L1Q92503 715 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 SIX2Q9NPC8 291 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 COL4A1P02462 1669 aa15.43■□□□□ 0.06
SDC1-201ENST00000254351 CLDN3O15551 220 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 THAP12O43422 761 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 KCNQ2O43526 872 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 ALADP13716 330 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 COMTP21964 271 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 HOXD13P35453 343 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 GJC1P36383 396 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 CRKLP46109 303 aaKnown RBP15.42■□□□□ 0.06
SDC1-201ENST00000254351 PTDSS1P48651 473 aaKnown RBP15.42■□□□□ 0.06
SDC1-201ENST00000254351 CDK8P49336 464 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 COBLL1Q53SF7 1204 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 C10orf76Q5T2E6 689 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 PCDHA2Q9Y5H9 948 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 ZBTB39O15060 712 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 CALCAP01258 141 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 FTLP02792 175 aaPredicted RBP15.42■□□□□ 0.06
SDC1-201ENST00000254351 NMT1P30419 496 aaKnown RBP15.42■□□□□ 0.06
SDC1-201ENST00000254351 FOXN2P32314 431 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 RAB27AP51159 221 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 KNOP1Q1ED39 458 aaKnown RBP15.42■□□□□ 0.06
SDC1-201ENST00000254351 TMEM119Q4V9L6 283 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 C2CD6Q53TS8 623 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 PHC3Q8NDX5 983 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 CNKSR1Q969H4 720 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 SLC35C1Q96A29 364 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 RUSC1Q9BVN2 902 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 NT5C3AQ9H0P0 336 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 ALG13Q9NP73 1137 aaKnown RBP15.42■□□□□ 0.06
SDC1-201ENST00000254351 DCTN4Q9UJW0 460 aa15.42■□□□□ 0.06
SDC1-201ENST00000254351 TAF1P21675 1872 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 NTSR2O95665 410 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 VCAM1P19320 739 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 PTGIRP43119 386 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 GRIPAP1Q4V328 841 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 PRR16Q569H4 304 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 LMNTD2Q8IXW0 634 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 C4orf33Q8N1A6 199 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 FAM13CQ8NE31 585 aa15.41■□□□□ 0.06
SDC1-201ENST00000254351 BHMT2Q9H2M3 363 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms