RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MXRA8Q9BRK3 442 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 TXLNGYQ9BZA5 131 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.21■□□□□ 0.83
CPSF3-201ENST00000238112 BCS1LQ9Y276 419 aa20.21■□□□□ 0.83
CPSF3-201ENST00000238112 TMEM110-MUSTN1A8MSY1 372 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 USP8P40818 1118 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 GCLMP48507 274 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 SUGP1Q8IWZ8 645 aaKnown RBP20.2■□□□□ 0.82
CPSF3-201ENST00000238112 ZDHHC18Q9NUE0 388 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 PKD2L1Q9P0L9 805 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 ZBTB21Q9ULJ3 1066 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 DCDC2CA8MYV0 355 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 H0YIN7 160 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 PHF2O75151 1096 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 PLTPP55058 493 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 PPP3CAQ08209 521 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 TNIP1Q15025 636 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 KRT27Q7Z3Y8 459 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 FAM160B2Q86V87 743 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 CNPY4Q8N129 248 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 CNOT10Q9H9A5 744 aaKnown RBP20.2■□□□□ 0.82
CPSF3-201ENST00000238112 SNX24Q9Y343 169 aa20.2■□□□□ 0.82
CPSF3-201ENST00000238112 RBBP6Q7Z6E9 1792 aaKnown RBP20.2■□□□□ 0.82
CPSF3-201ENST00000238112 PAEPP09466 180 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 CHRNA3P32297 505 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 PMS2P54278 862 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 LDHDQ86WU2 507 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 PRPF38AQ8NAV1 312 aaKnown RBP20.19■□□□□ 0.82
CPSF3-201ENST00000238112 C18orf8Q96DM3 657 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 ZSWIM1Q9BR11 485 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 TISP43B9A030 160 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 MAPTP10636 758 aaKnown RBP20.19■□□□□ 0.82
CPSF3-201ENST00000238112 DRG2P55039 364 aaKnown RBP20.19■□□□□ 0.82
CPSF3-201ENST00000238112 EPC2Q52LR7 807 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 SEL1L2Q5TEA6 688 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 DENND2CQ68D51 928 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 MSL1Q68DK7 614 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 AADACL2Q6P093 401 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 XXYLT1Q8NBI6 393 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 RAPGEF5Q92565 580 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 KRT35Q92764 455 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 CBWD1Q9BRT8 395 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 PABPC3Q9H361 631 aaKnown RBP20.19■□□□□ 0.82
CPSF3-201ENST00000238112 VCPKMTQ9H867 229 aa20.19■□□□□ 0.82
CPSF3-201ENST00000238112 KIAA0391O15091 583 aaKnown RBP20.18■□□□□ 0.82
CPSF3-201ENST00000238112 RTN2O75298 545 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 P4HBP07237 508 aaKnown RBP20.18■□□□□ 0.82
CPSF3-201ENST00000238112 HNRNPH1P31943 449 aaKnown RBP20.18■□□□□ 0.82
CPSF3-201ENST00000238112 FNTAP49354 379 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 TCEAL1Q15170 157 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 STYK1Q6J9G0 422 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 ZNF746Q6NUN9 644 aaPredicted RBP20.18■□□□□ 0.82
CPSF3-201ENST00000238112 CCDC121Q6ZUS5 278 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 ARMC9Q7Z3E5 817 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 TLCD1Q96CP7 247 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 DDX20Q9UHI6 824 aaKnown RBP20.18■□□□□ 0.82
CPSF3-201ENST00000238112 CLRN2A0PK11 232 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 NUDT17P0C025 328 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 ITGB5P18084 799 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 GBP1P32455 592 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 GTF2A1P52655 376 aaPredicted RBP20.18■□□□□ 0.82
CPSF3-201ENST00000238112 MESDQ14696 234 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 C12orf56Q8IXR9 622 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 FBXO25Q8TCJ0 367 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 RPS6KC1Q96S38 1066 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 HSPBP1Q9NZL4 362 aa20.18■□□□□ 0.82
CPSF3-201ENST00000238112 CAND2O75155 1236 aa20.17■□□□□ 0.82
CPSF3-201ENST00000238112 PLS3P13797 630 aa20.17■□□□□ 0.82
CPSF3-201ENST00000238112 MXI1P50539 228 aa20.17■□□□□ 0.82
CPSF3-201ENST00000238112 C6orf89Q6UWU4 347 aa20.17■□□□□ 0.82
CPSF3-201ENST00000238112 LRRC4CQ9HCJ2 640 aa20.17■□□□□ 0.82
CPSF3-201ENST00000238112 KCNH7Q9NS40 1196 aa20.17■□□□□ 0.82
CPSF3-201ENST00000238112 FEM1BQ9UK73 627 aa20.17■□□□□ 0.82
CPSF3-201ENST00000238112 MYH11P35749 1972 aa20.17■□□□□ 0.82
CPSF3-201ENST00000238112 TULP1O00294 542 aaPredicted RBP20.16■□□□□ 0.82
CPSF3-201ENST00000238112 PODXLO00592 558 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 PLA2G6O60733 806 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 GGPS1O95749 300 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 COMTP21964 271 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 MARCKSL1P49006 195 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 DRP2Q13474 957 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 GRIPAP1Q4V328 841 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 ZDHHC24Q6UX98 284 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 PRELID2Q8N945 189 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 TMEM174Q8WUU8 243 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 CABS1Q96KC9 395 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 WNT8AQ9H1J5 351 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 FBXO28Q9NVF7 368 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 MTRF1LQ9UGC7 380 aaKnown RBP20.16■□□□□ 0.82
CPSF3-201ENST00000238112 PARP2Q9UGN5 583 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 ZHX2Q9Y6X8 837 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 CCDC169A6NNP5 214 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 SHBGP04278 402 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 PTGIRP43119 386 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 BYSLQ13895 437 aaKnown RBP20.16■□□□□ 0.82
CPSF3-201ENST00000238112 QPCTQ16769 361 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 MORC4Q8TE76 937 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 AKT1S1Q96B36 256 aa20.16■□□□□ 0.82
CPSF3-201ENST00000238112 QTRT2Q9H974 415 aaKnown RBP20.16■□□□□ 0.82
CPSF3-201ENST00000238112 PCYOX1Q9UHG3 505 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms