RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 STK39Q9UEW8 545 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 RALYQ9UKM9 306 aaKnown RBP18.48■□□□□ 0.55
CLN3-264ENST00000637985 SMG5Q9UPR3 1016 aaKnown RBP18.48■□□□□ 0.55
CLN3-264ENST00000637985 AKT3Q9Y243 479 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 MAFBQ9Y5Q3 323 aaPredicted RBP18.48■□□□□ 0.55
CLN3-264ENST00000637985 PATJQ8NI35 1801 aa18.48■□□□□ 0.55
CLN3-264ENST00000637985 MYH9P35579 1960 aaKnown RBP18.48■□□□□ 0.55
CLN3-264ENST00000637985 CCDC69A6NI79 296 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 DDX39AO00148 427 aaKnown RBP18.47■□□□□ 0.55
CLN3-264ENST00000637985 SH2B2O14492 632 aaPredicted RBP18.47■□□□□ 0.55
CLN3-264ENST00000637985 LAMTOR5O43504 91 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 PLEKHA8P1O95397 391 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 PAPLNO95428 1278 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 PHKA2P46019 1235 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 SLC11A1P49279 550 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 GNAQP50148 359 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 HTR4Q13639 388 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 EFCAB12Q6NXP0 572 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 MIS18BP1Q6P0N0 1132 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 NFXL1Q6ZNB6 911 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 CKAP2LQ8IYA6 745 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 MAP7D2Q96T17 732 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 MYL10Q9BUA6 226 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 DDX23Q9BUQ8 820 aaKnown RBP18.47■□□□□ 0.55
CLN3-264ENST00000637985 BCO2Q9BYV7 579 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 ZSCAN32Q9NX65 697 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.47■□□□□ 0.55
CLN3-264ENST00000637985 DNAJB4Q9UDY4 337 aa18.47■□□□□ 0.55
CLN3-264ENST00000637985 INPPL1O15357 1258 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 DHX15O43143 795 aaKnown RBP18.46■□□□□ 0.55
CLN3-264ENST00000637985 SSBP05455 408 aaKnown RBP eCLIP18.46■□□□□ 0.55
CLN3-264ENST00000637985 CALM1P0DP23 149 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 CALM2P0DP24 149 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 CALM3P0DP25 149 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 FGFR4P22455 802 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 GPC3P51654 580 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 CSTF1Q05048 431 aaKnown RBP18.46■□□□□ 0.55
CLN3-264ENST00000637985 NOMO2Q5JPE7 1267 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 SKAP1Q86WV1 359 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 LPPQ93052 612 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 ZNF707Q96C28 371 aaPredicted RBP18.46■□□□□ 0.55
CLN3-264ENST00000637985 ZNF668Q96K58 619 aaPredicted RBP18.46■□□□□ 0.55
CLN3-264ENST00000637985 PARD6AQ9NPB6 346 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 CHST12Q9NRB3 414 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 MRPL17Q9NRX2 175 aaKnown RBP18.46■□□□□ 0.55
CLN3-264ENST00000637985 USP18Q9UMW8 372 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 CEP131Q9UPN4 1083 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 NUMBLQ9Y6R0 609 aa18.46■□□□□ 0.55
CLN3-264ENST00000637985 KANSL1LA0AUZ9 987 aa18.45■□□□□ 0.54
CLN3-264ENST00000637985 B4GALT3O60512 393 aa18.45■□□□□ 0.54
CLN3-264ENST00000637985 OFD1O75665 1012 aa18.45■□□□□ 0.54
CLN3-264ENST00000637985 TMOD1P28289 359 aa18.45■□□□□ 0.54
CLN3-264ENST00000637985 COL9A2Q14055 689 aaPredicted RBP18.45■□□□□ 0.54
CLN3-264ENST00000637985 PPM1JQ5JR12 505 aa18.45■□□□□ 0.54
CLN3-264ENST00000637985 GLB1LQ6UWU2 654 aa18.45■□□□□ 0.54
CLN3-264ENST00000637985 CMTR1Q8N1G2 835 aaKnown RBP18.45■□□□□ 0.54
CLN3-264ENST00000637985 LRRC71Q8N4P6 559 aa18.45■□□□□ 0.54
CLN3-264ENST00000637985 SMG7Q92540 1137 aaKnown RBP18.45■□□□□ 0.54
CLN3-264ENST00000637985 DPP7Q9UHL4 492 aa18.45■□□□□ 0.54
CLN3-264ENST00000637985 MTF2Q9Y483 593 aaPredicted RBP18.45■□□□□ 0.54
CLN3-264ENST00000637985 MEIS3P2A8K0S8 358 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 TBC1D4O60343 1298 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 CDC45O75419 566 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 RFPL2O75678 378 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 GPC5P78333 572 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 RNASELQ05823 741 aaKnown RBP18.44■□□□□ 0.54
CLN3-264ENST00000637985 ELMSAN1Q6PJG2 1045 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 NIPA1Q7RTP0 329 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 TRMT1LQ7Z2T5 733 aaKnown RBP18.44■□□□□ 0.54
CLN3-264ENST00000637985 ZNF280BQ86YH2 543 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 RPP25Q9BUL9 199 aaKnown RBP18.44■□□□□ 0.54
CLN3-264ENST00000637985 OSBPL6Q9BZF3 934 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 INPP5FQ9Y2H2 1132 aa18.44■□□□□ 0.54
CLN3-264ENST00000637985 hCG_1642624A0A1W2PR95 340 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 SLC30A4O14863 429 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 TEX28O15482 410 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 CSDE1O75534 798 aaKnown RBP18.43■□□□□ 0.54
CLN3-264ENST00000637985 ADH1AP07327 375 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 SKIP12755 728 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 SNW1Q13573 536 aaKnown RBP18.43■□□□□ 0.54
CLN3-264ENST00000637985 TSGA10IPQ3SY00 556 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 LONRF3Q496Y0 759 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 SGMS1Q86VZ5 419 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 CCDC136Q96JN2 1154 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 PGBD1Q96JS3 809 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 RPS6KC1Q96S38 1066 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 GBP3Q9H0R5 595 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 SLC12A7Q9Y666 1083 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 COL4A3Q01955 1670 aa18.43■□□□□ 0.54
CLN3-264ENST00000637985 ZNF623O75123 536 aa18.42■□□□□ 0.54
CLN3-264ENST00000637985 GLUD1P00367 558 aa18.42■□□□□ 0.54
CLN3-264ENST00000637985 FOSP01100 380 aaPredicted RBP18.42■□□□□ 0.54
CLN3-264ENST00000637985 MAGEA9P43362 315 aa18.42■□□□□ 0.54
CLN3-264ENST00000637985 PRKCQQ04759 706 aa18.42■□□□□ 0.54
CLN3-264ENST00000637985 COL9A3Q14050 684 aaPredicted RBP18.42■□□□□ 0.54
CLN3-264ENST00000637985 TEX2Q8IWB9 1127 aa18.42■□□□□ 0.54
CLN3-264ENST00000637985 ST13P5Q8NFI4 369 aaPredicted RBP18.42■□□□□ 0.54
CLN3-264ENST00000637985 HDAC7Q8WUI4 952 aa18.42■□□□□ 0.54
CLN3-264ENST00000637985 NT5C3AQ9H0P0 336 aa18.42■□□□□ 0.54
CLN3-264ENST00000637985 MYH15Q9Y2K3 1946 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms