RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 A0A0G2JMZ2 1700 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 SOWAHBA6NEL2 793 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 PDE2AO00408 941 aaPredicted RBP17.03■□□□□ 0.32
CLN3-251ENST00000636853 NCK2O43639 380 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 LRRN2O75325 713 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 DRAP1Q14919 205 aaPredicted RBP17.03■□□□□ 0.32
CLN3-251ENST00000636853 NAB2Q15742 525 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 MTERF2Q49AM1 385 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 ERO1BQ86YB8 467 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 PLEKHO2Q8TD55 490 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 KIFAP3Q92845 792 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 PSMB7Q99436 277 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 MAF1Q9H063 256 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 ASCC2Q9H1I8 757 aaPredicted RBP17.03■□□□□ 0.32
CLN3-251ENST00000636853 XPNPEP1Q9NQW7 623 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 CYP26B1Q9NR63 512 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 F8VZ95 297 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 POTEB2H3BUK9 544 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 EVI5O60447 810 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 ZRANB2O95218 330 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLN3-251ENST00000636853 ADSSP30520 456 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 ICAM3P32942 547 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 STAT1P42224 750 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 GCLMP48507 274 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 C1orf220Q5T0J3 134 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 ANKRD13AQ8IZ07 590 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 RNF10Q8N5U6 811 aaKnown RBP17.02■□□□□ 0.32
CLN3-251ENST00000636853 PROCA1Q8NCQ7 364 aaPredicted RBP17.02■□□□□ 0.32
CLN3-251ENST00000636853 CAGE1Q8TC20 777 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 TMEM174Q8WUU8 243 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 SAAL1Q96ER3 474 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 STK33Q9BYT3 514 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 PDLIM7Q9NR12 457 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 APEX2Q9UBZ4 518 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 FBXO40Q9UH90 709 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 ADGRA3Q8IWK6 1321 aa17.02■□□□□ 0.32
CLN3-251ENST00000636853 DGAT1O75907 488 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 ADRB2P07550 413 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 ATP4AP20648 1035 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 CXCR5P32302 372 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 SOX5P35711 763 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 ARHGAP44Q17R89 818 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 PHLDB3Q6NSJ2 640 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 CC2D1AQ6P1N0 951 aaPredicted RBP17.01■□□□□ 0.31
CLN3-251ENST00000636853 NFRKBQ6P4R8 1299 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 CBWD2Q8IUF1 395 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 MAP4K3Q8IVH8 894 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 MSANTD4Q8NCY6 345 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 SLC17A8Q8NDX2 589 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 LMO3Q8TAP4 145 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 COG1Q8WTW3 980 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 GPR88Q9GZN0 384 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 RNF216Q9NWF9 866 aaPredicted RBP17.01■□□□□ 0.31
CLN3-251ENST00000636853 NAGPAQ9UK23 515 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 EXOC7Q9UPT5 735 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 FERP16591 822 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 CNGA1P29973 690 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 ALKBH5Q6P6C2 394 aaKnown RBP17.01■□□□□ 0.31
CLN3-251ENST00000636853 EEPD1Q7L9B9 569 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 SYNGAP1Q96PV0 1343 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 IGSF9BQ9UPX0 1349 aa17.01■□□□□ 0.31
CLN3-251ENST00000636853 SPDYE5A6NIY4 337 aa17■□□□□ 0.31
CLN3-251ENST00000636853 PALMO75781 387 aa17■□□□□ 0.31
CLN3-251ENST00000636853 CNMDO75829 334 aa17■□□□□ 0.31
CLN3-251ENST00000636853 NF2P35240 595 aa17■□□□□ 0.31
CLN3-251ENST00000636853 SNRPFP62306 86 aaKnown RBP17■□□□□ 0.31
CLN3-251ENST00000636853 TUBB4BP68371 445 aa17■□□□□ 0.31
CLN3-251ENST00000636853 CKAP4Q07065 602 aaKnown RBP17■□□□□ 0.31
CLN3-251ENST00000636853 XKR3Q5GH77 459 aa17■□□□□ 0.31
CLN3-251ENST00000636853 MCPH1Q8NEM0 835 aa17■□□□□ 0.31
CLN3-251ENST00000636853 SPIRE2Q8WWL2 714 aa17■□□□□ 0.31
CLN3-251ENST00000636853 OSBPL9Q96SU4 736 aa17■□□□□ 0.31
CLN3-251ENST00000636853 NTPCRQ9BSD7 190 aaKnown RBP17■□□□□ 0.31
CLN3-251ENST00000636853 ATP6V0A4Q9HBG4 840 aa17■□□□□ 0.31
CLN3-251ENST00000636853 ZNF302Q9NR11 478 aa17■□□□□ 0.31
CLN3-251ENST00000636853 EPHX2P34913 555 aa17■□□□□ 0.31
CLN3-251ENST00000636853 DPY19L2Q6NUT2 758 aa17■□□□□ 0.31
CLN3-251ENST00000636853 SLC39A4Q6P5W5 647 aa17■□□□□ 0.31
CLN3-251ENST00000636853 CREG2Q8IUH2 290 aa17■□□□□ 0.31
CLN3-251ENST00000636853 TLR10Q9BXR5 811 aa17■□□□□ 0.31
CLN3-251ENST00000636853 POLR3FQ9H1D9 316 aaPredicted RBP17■□□□□ 0.31
CLN3-251ENST00000636853 C17orf75Q9HAS0 396 aa17■□□□□ 0.31
CLN3-251ENST00000636853 TXNRD2Q9NNW7 524 aa17■□□□□ 0.31
CLN3-251ENST00000636853 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17■□□□□ 0.316e-9■■■■■ 134.6
CLN3-251ENST00000636853 DDX3XO00571 662 aaKnown RBP eCLIP16.99■□□□□ 0.311e-10■■■□□ 14.7
CLN3-251ENST00000636853 CXCL11O14625 94 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 ATG7O95352 703 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 FTCDO95954 541 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 UBA1P22314 1058 aaKnown RBP16.99■□□□□ 0.31
CLN3-251ENST00000636853 BMS1Q14692 1282 aaKnown RBP16.99■□□□□ 0.31
CLN3-251ENST00000636853 SNRNP35Q16560 246 aaKnown RBP16.99■□□□□ 0.31
CLN3-251ENST00000636853 HVCN1Q96D96 273 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 ARFGAP3Q9NP61 516 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 HYOU1Q9Y4L1 999 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 MAFBQ9Y5Q3 323 aaPredicted RBP16.99■□□□□ 0.31
CLN3-251ENST00000636853 PGK2P07205 417 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 C10orf76Q5T2E6 689 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 USP50Q70EL3 339 aaPredicted RBP16.99■□□□□ 0.31
CLN3-251ENST00000636853 VPS36Q86VN1 386 aa16.99■□□□□ 0.31
CLN3-251ENST00000636853 ARHGEF19Q8IW93 802 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms