RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LINC01465Q8N7H1 131 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 NELL1Q92832 810 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 ZNF707Q96C28 371 aaPredicted RBP16.51■□□□□ 0.23
CLN3-249ENST00000636685 PGBD1Q96JS3 809 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 MAP7D2Q96T17 732 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 DDX23Q9BUQ8 820 aaKnown RBP16.51■□□□□ 0.23
CLN3-249ENST00000636685 RHOBTB2Q9BYZ6 727 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 MRPL17Q9NRX2 175 aaKnown RBP16.51■□□□□ 0.23
CLN3-249ENST00000636685 DACT1Q9NYF0 836 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 GMEB2Q9UKD1 530 aa16.51■□□□□ 0.23
CLN3-249ENST00000636685 CARNS1A5YM72 827 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 FAM170BA6NMN3 283 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 SPATA31D3P0C874 917 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 KCNA4P22459 653 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 DMWDQ09019 674 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 CEP55Q53EZ4 464 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 MIS18BP1Q6P0N0 1132 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 GLB1LQ6UWU2 654 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 CYP26C1Q6V0L0 522 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 SPATA31D4Q6ZUB0 917 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 SRBD1Q8N5C6 995 aaKnown RBP16.5■□□□□ 0.23
CLN3-249ENST00000636685 CTCFLQ8NI51 663 aaPredicted RBP16.5■□□□□ 0.23
CLN3-249ENST00000636685 NETO1Q8TDF5 533 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 SCLT1Q96NL6 688 aa16.5■□□□□ 0.23
CLN3-249ENST00000636685 SH2B1Q9NRF2 756 aaPredicted RBP16.5■□□□□ 0.23
CLN3-249ENST00000636685 CEP295Q9C0D2 2601 aa16.49■□□□□ 0.23
CLN3-249ENST00000636685 FRYQ5TBA9 3013 aa16.49■□□□□ 0.23
CLN3-249ENST00000636685 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.49■□□□□ 0.23
CLN3-249ENST00000636685 CD72P21854 359 aa16.49■□□□□ 0.23
CLN3-249ENST00000636685 GPC3P51654 580 aa16.49■□□□□ 0.23
CLN3-249ENST00000636685 AK2P54819 239 aa16.49■□□□□ 0.23
CLN3-249ENST00000636685 MLF2Q15773 248 aaPredicted RBP16.49■□□□□ 0.23
CLN3-249ENST00000636685 LPAL2Q16609 132 aa16.49■□□□□ 0.23
CLN3-249ENST00000636685 PIDD1Q9HB75 910 aa16.49■□□□□ 0.23
CLN3-249ENST00000636685 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLN3-249ENST00000636685 ANGPTL2Q9UKU9 493 aa16.49■□□□□ 0.23
CLN3-249ENST00000636685 MEIS1O00470 390 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 MAGEB2O15479 319 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 TEX28O15482 410 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 OFD1O75665 1012 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 GLUD1P00367 558 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 SMARCA1P28370 1054 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 ACAP1Q15027 740 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 PARM1Q6UWI2 310 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 TAS1R1Q7RTX1 841 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 ZNF654Q8IZM8 581 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 FGF14Q92915 247 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 IL25Q9H293 177 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 MAFBQ9Y5Q3 323 aaPredicted RBP16.48■□□□□ 0.23
CLN3-249ENST00000636685 TAF6LQ9Y6J9 622 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 ASPMQ8IZT6 3477 aa16.48■□□□□ 0.23
CLN3-249ENST00000636685 DHX15O43143 795 aaKnown RBP16.47■□□□□ 0.23
CLN3-249ENST00000636685 DDHD2O94830 711 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 URODP06132 367 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 ADH1AP07327 375 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 TMOD1P28289 359 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 ANTXR2P58335 489 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 SART3Q15020 963 aaKnown RBP16.47■□□□□ 0.23
CLN3-249ENST00000636685 SLC44A4Q53GD3 710 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 TWF2Q6IBS0 349 aaKnown RBP16.47■□□□□ 0.23
CLN3-249ENST00000636685 ELMSAN1Q6PJG2 1045 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 IGDCC4Q8TDY8 1250 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 NLRP7Q8WX94 980 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 RSPH1Q8WYR4 309 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 RPS6KC1Q96S38 1066 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 MAP3K14Q99558 947 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 LZTS2Q9BRK4 669 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 OSBPL6Q9BZF3 934 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 LNPKQ9C0E8 428 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 NT5C3AQ9H0P0 336 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 LTB4R2Q9NPC1 389 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 CEP131Q9UPN4 1083 aa16.47■□□□□ 0.23
CLN3-249ENST00000636685 SOD2P04179 222 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 PRKCQQ04759 706 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 HEATR3Q7Z4Q2 680 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 PHKBQ93100 1093 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 HERC2P3Q9BVR0 1158 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 LY9Q9HBG7 655 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 CHST12Q9NRB3 414 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 STK39Q9UEW8 545 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 DPP7Q9UHL4 492 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 FAN1Q9Y2M0 1017 aa16.46■□□□□ 0.23
CLN3-249ENST00000636685 NRP1O14786 923 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 DDAH1O94760 285 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 PAPLNO95428 1278 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 ALDH2P05091 517 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 CYP21A2P08686 494 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 PMLP29590 882 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 ZNF76P36508 570 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 MAGEA9P43362 315 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 AFF1P51825 1210 aaKnown RBP16.45■□□□□ 0.22
CLN3-249ENST00000636685 ZBTB41Q5SVQ8 909 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 RALYLQ86SE5 291 aaKnown RBP16.45■□□□□ 0.22
CLN3-249ENST00000636685 PALB2Q86YC2 1186 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 ZNF710Q8N1W2 664 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 CCDC82Q8N4S0 544 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 TRAIPQ9BWF2 469 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 ANO3Q9BYT9 981 aa16.45■□□□□ 0.22
CLN3-249ENST00000636685 PRMT8Q9NR22 394 aaPredicted RBP16.45■□□□□ 0.22
CLN3-249ENST00000636685 FAM105AQ9NUU6 356 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms