RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 KCNH2Q12809 1159 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 C10orf53Q8N6V4 93 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 EXT2Q93063 718 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 GTSE1Q9NYZ3 720 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 ANAPC2Q9UJX6 822 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 HPS5Q9UPZ3 1129 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PCDH11XQ9BZA7 1347 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PCDH11YQ9BZA8 1340 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 SDK1Q7Z5N4 2213 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 CENPXA8MT69 81 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 INO80B-WBP1J3KQ70 363 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 TNPO2O14787 897 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 ANGPT2O15123 496 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 EPN2O95208 641 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 FLT3P36888 993 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 IYDQ6PHW0 289 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 CAPN12Q6ZSI9 719 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PYROXD1Q8WU10 500 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 NDFIP2Q9NV92 336 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 NRBP1Q9UHY1 535 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 RWDD3Q9Y3V2 267 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PCDHGB3Q9Y5G1 929 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 TROQ12816 1431 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 ZMYM3Q14202 1370 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 GYG2O15488 501 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 HIST1H2AGP0C0S8 130 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 HIST1H2ADP20671 130 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 LRRC74AQ0VAA2 488 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PKN2Q16513 984 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 FAM133BQ5BKY9 247 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 DAB2IPQ5VWQ8 1189 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 NFRKBQ6P4R8 1299 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 DDX53Q86TM3 631 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 HIST1H2AHQ96KK5 128 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 HIST1H2AJQ99878 128 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 H2AFJQ9BTM1 129 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PSTPIP2Q9H939 334 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 POLKQ9UBT6 870 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PI4KAP2A4QPH2 592 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 MTFR1Q15390 333 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PYHIN1Q6K0P9 492 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 TOGARAM2Q6ZUX3 1019 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 CCDC185Q8N715 623 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PI4KAP1Q8N8J0 262 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 KLHL28Q9NXS3 571 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 KLHL8Q9P2G9 620 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 TJP2Q9UDY2 1190 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 SPATA2Q9UM82 520 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 ZNF711Q9Y462 761 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 GJA8P48165 433 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 TGM3Q08188 693 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 CCNG2Q16589 344 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 TRIM72Q6ZMU5 477 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ADAT2Q7Z6V5 191 aaKnown RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 CDH24Q86UP0 819 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 COA7Q96BR5 231 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 PSMB7Q99436 277 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 CARD14Q9BXL6 1004 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ADNPQ9H2P0 1102 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 TMEM206Q9H813 350 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 IMPAD1Q9NX62 359 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ADA2Q9NZK5 511 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 SNAPC4Q5SXM2 1469 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 KDM2BQ8NHM5 1336 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 LAD1O00515 517 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 IREB2P48200 963 aaKnown RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 SLC16A1P53985 500 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ARPP19P56211 112 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 PPARDQ03181 441 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ALFQ53S48 1182 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 BRINP3Q76B58 766 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 SENP2Q9HC62 589 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 FAM207AQ9NSI2 230 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ATAD3AQ9NVI7 634 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 TUBGCP4Q9UGJ1 667 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 GRXCR2A6NFK2 248 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 SMIM22K7EJ46 135 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 PPIP5K2O43314 1243 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 LSP1P33241 339 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 PRAMEP78395 509 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 RBBP4Q09028 425 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 MAPRE1Q15691 268 aaKnown RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 SPDYAQ5MJ70 313 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 MARK2Q7KZI7 788 aaKnown RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 PRUNE1Q86TP1 453 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 PRPF18Q99633 342 aaKnown RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 MARK1Q9P0L2 795 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ARPP21Q9UBL0 812 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 UBA2Q9UBT2 640 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 H3BUI4 141 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 SERPIND1P05546 499 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 HIBADHP31937 336 aaKnown RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 TFAMQ00059 246 aaKnown RBP6.36□□□□□ -1.39
SCN1A-212ENST00000636194 STX5Q13190 355 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ZSCAN26Q16670 478 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ALG11Q2TAA5 492 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 OLFML2BQ68BL8 750 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 MSANTD1Q6ZTZ1 278 aa6.36□□□□□ -1.39
SCN1A-212ENST00000636194 ZBED8Q8IZ13 594 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms