RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 THAP2Q9H0W7 228 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 TMEM206Q9H813 350 aa13.83□□□□□ -0.2
LINC00540-203ENST00000631321 TCP10L2B9ZVM9 353 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 MYO1FO00160 1098 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 MAPK13O15264 365 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 KRT13P13646 458 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 FLT3P36888 993 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 SKIDA1Q1XH10 827 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 EPC2Q52LR7 807 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 C11orf63Q6NUN7 778 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 PADI6Q6TGC4 694 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 PALB2Q86YC2 1186 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 SYCP3Q8IZU3 236 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 SUPT20HQ8NEM7 779 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 RABEP2Q9H5N1 569 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 DBR1Q9UK59 544 aaKnown RBP13.82□□□□□ -0.2
LINC00540-203ENST00000631321 COG5Q9UP83 839 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 BRWD3Q6RI45 1802 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 FAM187AA6NFU0 413 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 TBC1D12O60347 775 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 P4HBP07237 508 aaKnown RBP13.82□□□□□ -0.2
LINC00540-203ENST00000631321 ITGB5P18084 799 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 ABCB4P21439 1286 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 TTC31Q49AM3 519 aaPredicted RBP13.82□□□□□ -0.2
LINC00540-203ENST00000631321 DUPD1Q68J44 220 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 PROCA1Q8NCQ7 364 aaPredicted RBP13.82□□□□□ -0.2
LINC00540-203ENST00000631321 HOOK2Q96ED9 719 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 RAB17Q9H0T7 212 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 ZNF70Q9UC06 446 aaPredicted RBP13.82□□□□□ -0.2
LINC00540-203ENST00000631321 GGA2Q9UJY4 613 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 NR2E1Q9Y466 385 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 PFASO15067 1338 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 CNTNAP1P78357 1384 aa13.82□□□□□ -0.2
LINC00540-203ENST00000631321 K7ENM7 598 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 PPFIA2O75334 1257 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 LYPLA2O95372 231 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 PTGER2P43116 358 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 SNRPFP62306 86 aaKnown RBP13.81□□□□□ -0.2
LINC00540-203ENST00000631321 GHRHRQ02643 423 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 ARHGAP44Q17R89 818 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 NAA35Q5VZE5 725 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 MSL1Q68DK7 614 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 PACS2Q86VP3 889 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 ACCSQ96QU6 501 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 CELF4Q9BZC1 486 aaKnown RBP13.81□□□□□ -0.2
LINC00540-203ENST00000631321 ST6GALNAC4Q9H4F1 302 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.81□□□□□ -0.2
LINC00540-203ENST00000631321 LARSQ9P2J5 1176 aaKnown RBP13.81□□□□□ -0.2
LINC00540-203ENST00000631321 ZNF219Q9P2Y4 722 aaPredicted RBP13.81□□□□□ -0.2
LINC00540-203ENST00000631321 SLC12A6Q9UHW9 1150 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 SAMM50Q9Y512 469 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 EMSYQ7Z589 1322 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 MIF4GDA9UHW6 222 aaKnown RBP13.81□□□□□ -0.2
LINC00540-203ENST00000631321 DHX15O43143 795 aaKnown RBP13.81□□□□□ -0.2
LINC00540-203ENST00000631321 VCAM1P19320 739 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 VAMP7P51809 220 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 CETN1Q12798 172 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 DHX34Q14147 1143 aaKnown RBP13.81□□□□□ -0.2
LINC00540-203ENST00000631321 C1orf220Q5T0J3 134 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 MIER3Q7Z3K6 550 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 OR2W6PQ8NHA6 318 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 ALG3Q92685 438 aa13.81□□□□□ -0.2
LINC00540-203ENST00000631321 GOLGA6L10A0A0M3HER8 536 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 MTA2O94776 668 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 PLS3P13797 630 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 DRG2P55039 364 aaKnown RBP13.8□□□□□ -0.2
LINC00540-203ENST00000631321 DLG4P78352 724 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 PPP3CAQ08209 521 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 RSBN1LQ6PCB5 846 aaPredicted RBP13.8□□□□□ -0.2
LINC00540-203ENST00000631321 YTHDF3Q7Z739 585 aaKnown RBP13.8□□□□□ -0.2
LINC00540-203ENST00000631321 NLRP14Q86W24 1093 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 ARHGEF19Q8IW93 802 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 C3orf20Q8ND61 904 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 MYCBPAPQ8TBZ2 947 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 ZNF473Q8WTR7 871 aaKnown RBP13.8□□□□□ -0.2
LINC00540-203ENST00000631321 SLC20A1Q8WUM9 679 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 GMLQ99445 158 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 ERP44Q9BS26 406 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 UBE2TQ9NPD8 197 aaPredicted RBP13.8□□□□□ -0.2
LINC00540-203ENST00000631321 ZDHHC18Q9NUE0 388 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 LRRN2O75325 713 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 FAM107AO95990 144 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 ICAM1P05362 532 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 HSPA6P17066 643 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 CHRNA5P30532 468 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 DR1Q01658 176 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 DHX9Q08211 1270 aaKnown RBP13.8□□□□□ -0.2
LINC00540-203ENST00000631321 SPDYE2Q495Y8 402 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 FKBP1CQ5VVH2 108 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 UBLCP1Q8WVY7 318 aaPredicted RBP13.8□□□□□ -0.2
LINC00540-203ENST00000631321 RPS6KC1Q96S38 1066 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 CCT8L2Q96SF2 557 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 TRIM51Q9BSJ1 452 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 EFCC1Q9HA90 598 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 KCNH7Q9NS40 1196 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 FBXO28Q9NVF7 368 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 ALG6Q9Y672 507 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 ZHX2Q9Y6X8 837 aa13.8□□□□□ -0.2
LINC00540-203ENST00000631321 LOXHD1Q8IVV2 1947 aa13.79□□□□□ -0.2
LINC00540-203ENST00000631321 ZNF536O15090 1300 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms