RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SKIP12755 728 aa22.92■■□□□ 1.26
CLN3-240ENST00000631023 NAMPTP43490 491 aa22.92■■□□□ 1.26
CLN3-240ENST00000631023 SPECC1Q5M775 1068 aa22.92■■□□□ 1.26
CLN3-240ENST00000631023 ZBTB8OSQ8IWT0 167 aa22.92■■□□□ 1.26
CLN3-240ENST00000631023 SYMPKQ92797 1274 aaKnown RBP22.92■■□□□ 1.26
CLN3-240ENST00000631023 DRC1Q96MC2 740 aa22.92■■□□□ 1.26
CLN3-240ENST00000631023 TRAIPQ9BWF2 469 aa22.92■■□□□ 1.26
CLN3-240ENST00000631023 C2orf40Q9H1Z8 148 aa22.92■■□□□ 1.26
CLN3-240ENST00000631023 COL4A6Q14031 1691 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 ADGRA3Q8IWK6 1321 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 A0A0U1RQF3 1178 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 EOMESO95936 686 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 PLCG1P19174 1290 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 AXLP30530 894 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 FIBCD1Q8N539 461 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 DEPTORQ8TB45 409 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 ZNF689Q96CS4 500 aaPredicted RBP22.91■■□□□ 1.26
CLN3-240ENST00000631023 RUSC1Q9BVN2 902 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 PRDM12Q9H4Q4 367 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 ATP6V1DQ9Y5K8 247 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 CDH23Q9H251 3354 aa22.91■■□□□ 1.26
CLN3-240ENST00000631023 HOXA2O43364 376 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 GUCY2CP25092 1073 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 SLC12A3P55017 1021 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 MBTD1Q05BQ5 628 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 BTG3Q14201 252 aaPredicted RBP22.9■■□□□ 1.26
CLN3-240ENST00000631023 USP49Q70CQ1 688 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 ECHDC2Q86YB7 292 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 KCNG4Q8TDN1 519 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 SAMD11Q96NU1 681 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 GAS2L1Q99501 681 aaPredicted RBP22.9■■□□□ 1.26
CLN3-240ENST00000631023 CERS4Q9HA82 394 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 KCNG1Q9UIX4 513 aa22.9■■□□□ 1.26
CLN3-240ENST00000631023 ARHGEF15O94989 841 aa22.89■■□□□ 1.26
CLN3-240ENST00000631023 RAB27AP51159 221 aa22.89■■□□□ 1.26
CLN3-240ENST00000631023 ERVK-21P61565 698 aa22.89■■□□□ 1.26
CLN3-240ENST00000631023 CMTR2Q8IYT2 770 aaKnown RBP22.89■■□□□ 1.26
CLN3-240ENST00000631023 ARNTL2Q8WYA1 636 aa22.89■■□□□ 1.26
CLN3-240ENST00000631023 BSNDQ8WZ55 320 aa22.89■■□□□ 1.26
CLN3-240ENST00000631023 C17orf75Q9HAS0 396 aa22.89■■□□□ 1.26
CLN3-240ENST00000631023 RC3H2Q9HBD1 1191 aaKnown RBP22.89■■□□□ 1.26
CLN3-240ENST00000631023 POLD4Q9HCU8 107 aa22.89■■□□□ 1.26
CLN3-240ENST00000631023 HIP1RO75146 1068 aa22.89■■□□□ 1.25
CLN3-240ENST00000631023 SLC34A2O95436 690 aa22.89■■□□□ 1.25
CLN3-240ENST00000631023 DDIT3P35638 169 aa22.89■■□□□ 1.25
CLN3-240ENST00000631023 DNM1Q05193 864 aaKnown RBP22.89■■□□□ 1.25
CLN3-240ENST00000631023 DMP1Q13316 513 aaPredicted RBP22.89■■□□□ 1.25
CLN3-240ENST00000631023 RRAGBQ5VZM2 374 aa22.89■■□□□ 1.25
CLN3-240ENST00000631023 CDCA2Q69YH5 1023 aaPredicted RBP22.89■■□□□ 1.25
CLN3-240ENST00000631023 MYLIPQ8WY64 445 aa22.89■■□□□ 1.25
CLN3-240ENST00000631023 RAD54LQ92698 747 aa22.89■■□□□ 1.25
CLN3-240ENST00000631023 PRMT7Q9NVM4 692 aaPredicted RBP22.89■■□□□ 1.25
CLN3-240ENST00000631023 STXBP5LQ9Y2K9 1186 aa22.89■■□□□ 1.25
CLN3-240ENST00000631023 ZDHHC9Q9Y397 364 aa22.89■■□□□ 1.25
CLN3-240ENST00000631023 TSPAN1O60635 241 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 HOXA11P31270 313 aaPredicted RBP22.88■■□□□ 1.25
CLN3-240ENST00000631023 EFNA5P52803 228 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 DHX8Q14562 1220 aaKnown RBP22.88■■□□□ 1.25
CLN3-240ENST00000631023 MAPK6Q16659 721 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 NOTUMQ6P988 496 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 ABI1Q8IZP0 508 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 RNF169Q8NCN4 708 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 LARP4BQ92615 738 aaKnown RBP22.88■■□□□ 1.25
CLN3-240ENST00000631023 CCDC51Q96ER9 411 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 PRIMPOLQ96LW4 560 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 BLOC1S4Q9NUP1 217 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 FAM105AQ9NUU6 356 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 STK17AQ9UEE5 414 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 RWDD3Q9Y3V2 267 aa22.88■■□□□ 1.25
CLN3-240ENST00000631023 CCDC169A6NNP5 214 aa22.87■■□□□ 1.25
CLN3-240ENST00000631023 CUTAO60888 179 aa22.87■■□□□ 1.25
CLN3-240ENST00000631023 ZNF623O75123 536 aa22.87■■□□□ 1.25
CLN3-240ENST00000631023 PEX3P56589 373 aa22.87■■□□□ 1.25
CLN3-240ENST00000631023 CCDC73Q6ZRK6 1079 aa22.87■■□□□ 1.25
CLN3-240ENST00000631023 GPBP1Q86WP2 473 aa22.87■■□□□ 1.25
CLN3-240ENST00000631023 MTUS1Q9ULD2 1270 aa22.87■■□□□ 1.25
CLN3-240ENST00000631023 FOSL2P15408 326 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 ME1P48163 572 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 RAD51AP2Q09MP3 1159 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 MCM6Q14566 821 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 FAM187BQ17R55 369 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 PAN2Q504Q3 1202 aaKnown RBP22.86■■□□□ 1.25
CLN3-240ENST00000631023 DAW1Q8N136 415 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 FZD8Q9H461 694 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 PCDHB2Q9Y5E7 798 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 KIAA1671Q9BY89 1806 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 TRANK1O15050 2925 aa22.86■■□□□ 1.25
CLN3-240ENST00000631023 PRRC2BQ5JSZ5 2229 aaKnown RBP22.86■■□□□ 1.25
CLN3-240ENST00000631023 TBKBP1A7MCY6 615 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 KRT18P05783 430 aaKnown RBP22.85■■□□□ 1.25
CLN3-240ENST00000631023 FGFR1P11362 822 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 ARF4P18085 180 aaPredicted RBP22.85■■□□□ 1.25
CLN3-240ENST00000631023 KRT85P78386 507 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 NUCB2P80303 420 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 MAPK7Q13164 816 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 AMHR2Q16671 573 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 PPP4R3CPQ6ZMV5 832 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 ZNF598Q86UK7 904 aaKnown RBP22.85■■□□□ 1.25
CLN3-240ENST00000631023 TMEM192Q8IY95 271 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 CLP1Q92989 425 aaKnown RBP22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms