RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 SRGAP2CP0DJJ0 459 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 MUTP22033 750 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 TOB1P50616 345 aaPredicted RBP16.48■□□□□ 0.23
LINC00643-206ENST00000623985 UBE3AQ05086 875 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 CAMK1Q14012 370 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 TFDP1Q14186 410 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 CLLU1OSQ5K130 101 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 IFNLR1Q8IU57 520 aaPredicted RBP16.48■□□□□ 0.23
LINC00643-206ENST00000623985 POF1BQ8WVV4 589 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 PPP2R3CQ969Q6 453 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 MINDY3Q9H8M7 445 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 FAM105AQ9NUU6 356 aa16.48■□□□□ 0.23
LINC00643-206ENST00000623985 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.48■□□□□ 0.23
LINC00643-206ENST00000623985 USO1O60763 962 aaKnown RBP16.47■□□□□ 0.23
LINC00643-206ENST00000623985 ERLIN2O94905 339 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 CSPG5O95196 566 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 KCNA5P22460 613 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 DNAJB1P25685 340 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 PPM1AP35813 382 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 POU5F1BQ06416 359 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 CAPSQ13938 189 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 LEXMQ3ZCV2 418 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 POTEGQ6S5H5 508 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 THNSL1Q8IYQ7 743 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 C4orf32Q8N8J7 132 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 MCPH1Q8NEM0 835 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 HELQQ8TDG4 1101 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 NACC1Q96RE7 527 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 NFKBIZQ9BYH8 718 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 RAB34Q9BZG1 259 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 PCDHB6Q9Y5E3 794 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 STK24Q9Y6E0 443 aa16.47■□□□□ 0.23
LINC00643-206ENST00000623985 H3BQV1 296 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 TNFRSF10AO00220 468 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 ZNF623O75123 536 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 FGF18O76093 207 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 AXLP30530 894 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 ARL2P36404 184 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 PRPHP41219 470 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 PTENP60484 403 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 HYAL1Q12794 435 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 PTGDRQ13258 359 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 RILPL1Q5EBL4 403 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 MCTP1Q6DN14 999 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 LRRC55Q6ZSA7 311 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 IGSF22Q8N9C0 903 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 ASAP3Q8TDY4 903 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 POLR3FQ9H1D9 316 aaPredicted RBP16.46■□□□□ 0.23
LINC00643-206ENST00000623985 TLR9Q9NR96 1032 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 SMC3Q9UQE7 1217 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 LZTS1Q9Y250 596 aa16.46■□□□□ 0.23
LINC00643-206ENST00000623985 MTCL1Q9Y4B5 1905 aaKnown RBP16.46■□□□□ 0.23
LINC00643-206ENST00000623985 PLXNA3P51805 1871 aa16.46■□□□□ 0.22
LINC00643-206ENST00000623985 GLRA2P23416 452 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 PLCB3Q01970 1234 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 PDIA5Q14554 519 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 CTC1Q2NKJ3 1217 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 KCNT2Q6UVM3 1135 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 PGBD4Q96DM1 585 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 CCDC51Q96ER9 411 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 ZNF558Q96NG5 402 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.45■□□□□ 0.22
LINC00643-206ENST00000623985 CLDND1Q9NY35 253 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 LRWD1Q9UFC0 647 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 CNTNAP2Q9UHC6 1331 aa16.45■□□□□ 0.22
LINC00643-206ENST00000623985 DENND4AQ7Z401 1863 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 ARHGEF35A5YM69 484 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 CARNS1A5YM72 827 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 INO80B-WBP1J3KQ70 363 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 TSPAN1O60635 241 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 HOXA11P31270 313 aaPredicted RBP16.44■□□□□ 0.22
LINC00643-206ENST00000623985 IRS1P35568 1242 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 CCT6AP40227 531 aaKnown RBP16.44■□□□□ 0.22
LINC00643-206ENST00000623985 MBTD1Q05BQ5 628 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 PUS10Q3MIT2 529 aaKnown RBP16.44■□□□□ 0.22
LINC00643-206ENST00000623985 PDE12Q6L8Q7 609 aaKnown RBP16.44■□□□□ 0.22
LINC00643-206ENST00000623985 NOTUMQ6P988 496 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 GLB1LQ6UWU2 654 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 MRPS27Q92552 414 aaKnown RBP16.44■□□□□ 0.22
LINC00643-206ENST00000623985 LPPQ93052 612 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 BACH2Q9BYV9 841 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 PCDHB2Q9Y5E7 798 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 C2orf16Q68DN1 1984 aa16.44■□□□□ 0.22
LINC00643-206ENST00000623985 A0A087WWV3 80 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 FSD2A1L4K1 749 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 NCBP1Q09161 790 aaKnown RBP16.43■□□□□ 0.22
LINC00643-206ENST00000623985 CUL4AQ13619 759 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 UBXN11Q5T124 520 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 CDCA2Q69YH5 1023 aaPredicted RBP16.43■□□□□ 0.22
LINC00643-206ENST00000623985 EP400NLQ6ZTU2 488 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 ADGRD2Q7Z7M1 963 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 CNNM3Q8NE01 707 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.43■□□□□ 0.22
LINC00643-206ENST00000623985 SNX29Q8TEQ0 813 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 NECAB3Q96P71 396 aaPredicted RBP16.43■□□□□ 0.22
LINC00643-206ENST00000623985 GPRC5CQ9NQ84 441 aa16.43■□□□□ 0.22
LINC00643-206ENST00000623985 LRRIQ4A6NIV6 560 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 MEIS3P2A8K0S8 358 aa16.42■□□□□ 0.22
LINC00643-206ENST00000623985 H3BQ06 376 aaPredicted RBP16.42■□□□□ 0.22
LINC00643-206ENST00000623985 FSCN2O14926 492 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms