RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TEX13AQ9BXU3 409 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 FAM135AQ9P2D6 1515 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 FGFR3P22607 806 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 CSE1LP55060 971 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ATG14Q6ZNE5 492 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 TRIM67Q6ZTA4 783 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ARHGEF10LQ9HCE6 1279 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 HEY2Q9UBP5 337 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 CYTH3O43739 400 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 HOXA7P31268 230 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 USH1GQ495M9 461 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 CYP4X1Q8N118 509 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 PYDC1Q8WXC3 89 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 HSPH1Q92598 858 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 SNX25Q9H3E2 840 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 DAPK2Q9UIK4 370 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 TSR3Q9UJK0 312 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 LOC100653049A0A140TA62 436 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 LRRC10BA6NIK2 292 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 KRT34O76011 436 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 MMP1P03956 469 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 FUT4P22083 530 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 MTMR2Q13614 643 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 SLAIN2Q9P270 581 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 HSPA4LO95757 839 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 RPL13P26373 211 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 NONOQ15233 471 aaKnown RBP eCLIP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 SPOPLQ6IQ16 392 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 C14orf80Q86SX3 495 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 STKLD1Q8NE28 680 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 AENQ8WTP8 325 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 MXD3Q9BW11 206 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 SEMA6AQ9H2E6 1030 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 PLEKHA5Q9HAU0 1116 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 LGSNQ5TDP6 509 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 AGBL2Q5U5Z8 902 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 CCDC80Q76M96 950 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 IPPQ9Y573 584 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 PPP6R2O75170 966 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 RPS6KA5O75582 802 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ETFBP38117 255 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 LRRC74BQ6ZQY2 392 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ZCRB1Q8TBF4 217 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 CITED4Q96RK1 184 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 KLHL4Q9C0H6 718 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 APOBEC2Q9Y235 224 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 KRT16P08779 473 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 TFPTP0C1Z6 253 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 NME5P56597 212 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ALKBH5Q6P6C2 394 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 PYROXD1Q8WU10 500 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 NMT2O60551 498 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 CSPG5O95196 566 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 CENPOQ9BU64 300 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 POLR3CQ9BUI4 534 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 PUS7LQ9H0K6 701 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 GOLGA8OA6NCC3 632 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 GOLGA8NF8WBI6 632 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ATXN8OSP0DMR3 200 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 OSTNP61366 133 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 LDLRAP1Q5SW96 308 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 STOX1Q6ZVD7 989 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 MMGT1Q8N4V1 131 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ABHD8Q96I13 439 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 GSDMAQ96QA5 445 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 GCNAQ96QF7 691 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 EYA1Q99502 592 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ADAM22Q9P0K1 906 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 PSMD11O00231 422 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ST13P50502 369 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 ZBED8Q8IZ13 594 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 SSH3Q8TE77 659 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 SERPINI1Q99574 410 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 DDX25Q9UHL0 483 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 FAM47DPA6NHR8 397 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 USP1O94782 785 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 CPP00450 1065 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 SFSWAPQ12872 951 aaKnown RBP5.36□□□□□ -1.55
VPS13D-214ENST00000620676 GPR141Q7Z602 305 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 PACSIN3Q9UKS6 424 aa5.36□□□□□ -1.55
VPS13D-214ENST00000620676 PSMD14O00487 310 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 TRAPPC3O43617 180 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 SEMA3DO95025 777 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 CNPY1Q3B7I2 92 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 ZNF554Q86TJ5 538 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 LINS1Q8NG48 757 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 STK32AQ8WU08 396 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 PCDHB4Q9Y5E5 795 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 GCLCP48506 637 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-214ENST00000620676 TAF5Q15542 800 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 RNF135Q8IUD6 432 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 PPM1NQ8N819 430 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 OSBPL3Q9H4L5 887 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 THAP9Q9H5L6 903 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 ADD3Q9UEY8 706 aaKnown RBP5.35□□□□□ -1.55
VPS13D-214ENST00000620676 EXOC7Q9UPT5 735 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 COPEO14579 308 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 TRIM60Q495X7 471 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 USP37Q86T82 979 aa5.35□□□□□ -1.55
VPS13D-214ENST00000620676 BLIDQ8IZY5 108 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms